Difference between revisions of "RXN-11570"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15677 CPD-15677] == * smiles: ** CCCCCCC=CCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] == * direction: ** LEFT-TO-RIGHT * common name: ** amidase * ec number: ** [http...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15677 CPD-15677] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] ==
−
* smiles:
+
* direction:
−
** CCCCCCC=CCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=AFMMIIQKXQNEDN-DUPKWVSKSA-J
+
 
* common name:
 
* common name:
−
** 4-trans-undecenoyl-CoA
+
** amidase
−
* molecular weight:
+
* ec number:
−
** 929.765   
+
** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4]
 
* Synonym(s):
 
* Synonym(s):
−
** 4E-undecenoyl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-14789]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[CPD-237]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
−
* [[RXN-14788]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 indole-3-acetamide[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13682]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5025 PWY-5025]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3161]], indole-3-acetate biosynthesis III (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3161 PWY-3161]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90658640 90658640]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34371 34371]
−
{{#set: smiles=CCCCCCC=CCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
+
* LIGAND-RXN:
−
{{#set: inchi key=InChIKey=AFMMIIQKXQNEDN-DUPKWVSKSA-J}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03096 R03096]
−
{{#set: common name=4-trans-undecenoyl-CoA}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: molecular weight=929.765    }}
+
{{#set: common name=amidase}}
−
{{#set: common name=4E-undecenoyl-CoA}}
+
{{#set: ec number=EC-3.5.1.4}}
−
{{#set: consumed by=RXN-14789}}
+
{{#set: gene associated=Tiso_gene_13682}}
−
{{#set: produced by=RXN-14788}}
+
{{#set: in pathway=PWY-581|PWY-5025|PWY-3161}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:35, 21 March 2018

Reaction RXNN-404

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • amidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-5025, indole-3-acetate biosynthesis IV (bacteria): PWY-5025
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3161, indole-3-acetate biosynthesis III (bacteria): PWY-3161
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11570&oldid=35007"