Difference between revisions of "2.7.9.3-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_5901 == * left end position: ** 5949 * transcription direction: ** NEGATIVE * right end position: ** 6950 * centisome position: ** 46.50199...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] == * direction: ** LEFT-TO-RIGHT * common name: ** alpha-galactosidase * ec nu...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5901 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] ==
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* left end position:
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* direction:
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** 5949
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** alpha-galactosidase
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* right end position:
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* ec number:
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** 6950
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** [http://enzyme.expasy.org/EC/3.2.1.22 EC-3.2.1.22]
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* centisome position:
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** 46.501995   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[6PGLUCONOLACT-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[WATER]][c] '''+''' 1 [[CPD-170]][c] '''=>''' 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[CPD-1099]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 H2O[c] '''+''' 1 stachyose[c] '''=>''' 1 α-D-galactose[c] '''+''' 1 raffinose[c]
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***ec-number
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[P122-PWY]]
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* Gene: [[Tiso_gene_16101]]
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* [[RUMP-PWY]]
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** Source: [[orthology-esiliculosus]]
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* [[OXIDATIVEPENT-PWY]]
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** Source: [[orthology-creinhardtii]]
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* [[GLYCOLYSIS-E-D]]
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* Gene: [[Tiso_gene_4615]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_8673]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_3392]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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== Pathways ==
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=5949}}
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* LIGAND-RXN:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03634 R03634]
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{{#set: right end position=6950}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=46.501995    }}
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{{#set: common name=alpha-galactosidase}}
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{{#set: reaction associated=6PGLUCONOLACT-RXN}}
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{{#set: ec number=EC-3.2.1.22}}
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{{#set: pathway associated=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
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{{#set: gene associated=Tiso_gene_16101|Tiso_gene_4615|Tiso_gene_8673|Tiso_gene_3392}}
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{{#set: in pathway=PWY-6527}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:35, 21 March 2018

Reaction RXN-11501

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • alpha-galactosidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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