Difference between revisions of "Cis-delta15-3-hydroxygheddoyl-ACPs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RNA-LIGASE-ATP-RXN RNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** gtp-bindi...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** mitochondrial_car...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RNA-LIGASE-ATP-RXN RNA-LIGASE-ATP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** gtp-binding_protein
+
** ORF
 +
** mitochondrial_carrier_protein
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.5.1.3 EC-6.5.1.3]
+
** [http://enzyme.expasy.org/EC/1.1.1.34 EC-1.1.1.34]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[5-Phospho-RNA]][c] '''+''' 1 [[3Prime-OH-Terminated-RNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[RNAs]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 2 [[NADP]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 2 [[NADPH]][c] '''+''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a 5'-phospho-ribonucleoside-[RNA][c] '''+''' 1 an [RNA]-3'-hydroxyl[c] '''=>''' 1 AMP[c] '''+''' 1 a ribonucleic acid[c] '''+''' 1 diphosphate[c]
+
** 1 coenzyme A[c] '''+''' 1 (R)-mevalonate[c] '''+''' 2 NADP+[c] '''<=>''' 2 H+[c] '''+''' 2 NADPH[c] '''+''' 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8397]]
+
* Gene: [[Tiso_gene_16182]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_8398]]
+
* Gene: [[Tiso_gene_17889]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_8396]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 32: Line 38:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15989 15989]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07640 R07640]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P00971 P00971]
+
** [http://www.uniprot.org/uniprot/P16393 P16393]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P14891 P14891]
−
{{#set: common name=gtp-binding_protein}}
+
** [http://www.uniprot.org/uniprot/P16237 P16237]
−
{{#set: ec number=EC-6.5.1.3}}
+
** [http://www.uniprot.org/uniprot/P20715 P20715]
−
{{#set: gene associated=Tiso_gene_8397|Tiso_gene_8398|Tiso_gene_8396}}
+
** [http://www.uniprot.org/uniprot/Q59468 Q59468]
−
{{#set: in pathway=}}
+
** [http://www.uniprot.org/uniprot/Q01237 Q01237]
 +
** [http://www.uniprot.org/uniprot/Q61671 Q61671]
 +
** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
 +
** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
 +
** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
 +
** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
 +
** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
 +
** [http://www.uniprot.org/uniprot/P04035 P04035]
 +
** [http://www.uniprot.org/uniprot/P00347 P00347]
 +
** [http://www.uniprot.org/uniprot/P29058 P29058]
 +
** [http://www.uniprot.org/uniprot/P29057 P29057]
 +
** [http://www.uniprot.org/uniprot/Q12577 Q12577]
 +
** [http://www.uniprot.org/uniprot/Q12649 Q12649]
 +
** [http://www.uniprot.org/uniprot/Q00583 Q00583]
 +
** [http://www.uniprot.org/uniprot/Q01559 Q01559]
 +
** [http://www.uniprot.org/uniprot/P48022 P48022]
 +
** [http://www.uniprot.org/uniprot/Q43825 Q43825]
 +
** [http://www.uniprot.org/uniprot/Q43826 Q43826]
 +
** [http://www.uniprot.org/uniprot/P14773 P14773]
 +
** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
 +
** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
 +
** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
 +
** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
 +
** [http://www.uniprot.org/uniprot/P48019 P48019]
 +
** [http://www.uniprot.org/uniprot/Q41454 Q41454]
 +
** [http://www.uniprot.org/uniprot/Q42506 Q42506]
 +
** [http://www.uniprot.org/uniprot/Q41455 Q41455]
 +
** [http://www.uniprot.org/uniprot/Q41456 Q41456]
 +
** [http://www.uniprot.org/uniprot/Q41458 Q41458]
 +
** [http://www.uniprot.org/uniprot/P48020 P48020]
 +
** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
 +
** [http://www.uniprot.org/uniprot/Q42466 Q42466]
 +
** [http://www.uniprot.org/uniprot/O48624 O48624]
 +
** [http://www.uniprot.org/uniprot/O04188 O04188]
 +
** [http://www.uniprot.org/uniprot/O24594 O24594]
 +
** [http://www.uniprot.org/uniprot/Q41438 Q41438]
 +
** [http://www.uniprot.org/uniprot/O64966 O64966]
 +
** [http://www.uniprot.org/uniprot/O64967 O64967]
 +
** [http://www.uniprot.org/uniprot/Q03163 Q03163]
 +
** [http://www.uniprot.org/uniprot/Q39628 Q39628]
 +
** [http://www.uniprot.org/uniprot/P93514 P93514]
 +
** [http://www.uniprot.org/uniprot/O08424 O08424]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=mitochondrial_carrier_protein}}
 +
{{#set: ec number=EC-1.1.1.34}}
 +
{{#set: gene associated=Tiso_gene_16182|Tiso_gene_17889}}
 +
{{#set: in pathway=PWY-922|PWY-6174|PWY-7391|PWY-7524}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:36, 21 March 2018

Reaction 1.1.1.34-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • mitochondrial_carrier_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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