Difference between revisions of "Tiso gene 4555"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] == * direction: ** LEFT-TO-RIGHT * common name: ** tryptophan_synthase_(alpha_...")
(Created page with "Category:Gene == Gene Tiso_gene_437 == * right end position: ** 32747 * transcription direction: ** POSITIVE * left end position: ** 29761 * centisome position: ** 88.9503...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2382 RXN0-2382] ==
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== Gene Tiso_gene_437 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 32747
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* common name:
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* transcription direction:
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** tryptophan_synthase_(alpha_beta_chains)
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.2.1.122 EC-4.2.1.122]
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** 29761
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* centisome position:
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** 88.950325   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-14950]]
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** 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 indole[c] '''+''' 1 L-serine[c] '''=>''' 1 L-tryptophan[c] '''+''' 1 H2O[c]
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* Reaction: [[RXN-14957]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14959]]
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* [[Tiso_gene_17207]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_4604]]
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* Reaction: [[RXN0-949]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-6987]]
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* [[PWY0-501]]
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* [[PWY-7382]]
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* [[PWY0-1275]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=32747}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26434 26434]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=29761}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
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{{#set: centisome position=88.950325    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-14950|RXN-14957|RXN-14959|RXN0-949}}
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{{#set: common name=tryptophan_synthase_(alpha_beta_chains)}}
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{{#set: pathway associated=PWY-6987|PWY0-501|PWY-7382|PWY0-1275}}
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{{#set: ec number=EC-4.2.1.122}}
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{{#set: gene associated=Tiso_gene_17207|Tiso_gene_4604}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:37, 21 March 2018

Gene Tiso_gene_437

  • right end position:
    • 32747
  • transcription direction:
    • POSITIVE
  • left end position:
    • 29761
  • centisome position:
    • 88.950325
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4555&oldid=35210"