Difference between revisions of "TRNA-uridine13"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-DEOH-DEOXY-MANNOSE DTDP-DEOH-DEOXY-MANNOSE] == * smiles: ** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.23-RXN 3.2.1.23-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyprotein ** glycos...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DTDP-DEOH-DEOXY-MANNOSE DTDP-DEOH-DEOXY-MANNOSE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.23-RXN 3.2.1.23-RXN] ==
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* smiles:
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* direction:
−
** CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(C)C(=O)C(O)C(O)2))O3))
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** LEFT-TO-RIGHT
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* inchi key:
+
−
** InChIKey=PSXWNITXWWECNY-LPVGZGSHSA-L
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* common name:
 
* common name:
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** dTDP-4-dehydro-β-L-rhamnose
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** polyprotein
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* molecular weight:
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** glycoside_hydrolase
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** 544.302   
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* ec number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
 
* Synonym(s):
 
* Synonym(s):
−
** dTDP-4-oxo-6-deoxy-β-L-mannose
 
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** dTDP-4-oxo-β-L-rhamnose
 
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** dTDP-4-dehydro-6-deoxy-β-L-mannose
 
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** dTDP-4-keto-L-rhamnose
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[DTDPDEHYRHAMREDUCT-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 1 [[Beta-D-Galactosides]][c] '''=>''' 1 [[D-galactopyranose]][c] '''+''' 1 [[Non-Galactosylated-Galactose-Acceptors]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 H2O[c] '''+''' 1 a β-D-galactoside[c] '''=>''' 1 D-galactopyranose[c] '''+''' 1 a non galactosylated galactose acceptor[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_12839]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17558]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1398]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=53356769 53356769]
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** [http://www.uniprot.org/uniprot/P06219 P06219]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P11175 P11175]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62830 62830]
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** [http://www.uniprot.org/uniprot/P19668 P19668]
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* BIGG : dtdp4d6dm
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** [http://www.uniprot.org/uniprot/P20043 P20043]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P16278 P16278]
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** [http://www.genome.jp/dbget-bin/www_bget?C00688 C00688]
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** [http://www.uniprot.org/uniprot/P23780 P23780]
−
{{#set: smiles=CC1(=CN(C(=O)NC(=O)1)C3(CC(O)C(COP(=O)([O-])OP(=O)([O-])OC2(OC(C)C(=O)C(O)C(O)2))O3))}}
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** [http://www.uniprot.org/uniprot/P24131 P24131]
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{{#set: inchi key=InChIKey=PSXWNITXWWECNY-LPVGZGSHSA-L}}
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** [http://www.uniprot.org/uniprot/Q02603 Q02603]
−
{{#set: common name=dTDP-4-dehydro-β-L-rhamnose}}
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** [http://www.uniprot.org/uniprot/Q53790 Q53790]
−
{{#set: molecular weight=544.302    }}
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** [http://www.uniprot.org/uniprot/P23989 P23989]
−
{{#set: common name=dTDP-4-oxo-6-deoxy-β-L-mannose|dTDP-4-oxo-β-L-rhamnose|dTDP-4-dehydro-6-deoxy-β-L-mannose|dTDP-4-keto-L-rhamnose}}
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** [http://www.uniprot.org/uniprot/P48982 P48982]
−
{{#set: consumed by=DTDPDEHYRHAMREDUCT-RXN}}
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** [http://www.uniprot.org/uniprot/Q9UYG5 Q9UYG5]
 +
** [http://www.uniprot.org/uniprot/Q02604 Q02604]
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** [http://www.uniprot.org/uniprot/P0AC73 P0AC73]
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** [http://www.uniprot.org/uniprot/O58247 O58247]
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** [http://www.uniprot.org/uniprot/Q9UYH2 Q9UYH2]
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** [http://www.uniprot.org/uniprot/P00722 P00722]
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** [http://www.uniprot.org/uniprot/P06864 P06864]
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** [http://www.uniprot.org/uniprot/Q47170 Q47170]
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** [http://www.uniprot.org/uniprot/Q59140 Q59140]
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** [http://www.uniprot.org/uniprot/P00723 P00723]
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** [http://www.uniprot.org/uniprot/P94248 P94248]
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** [http://www.uniprot.org/uniprot/O31341 O31341]
 +
** [http://www.uniprot.org/uniprot/P22498 P22498]
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** [http://www.uniprot.org/uniprot/Q02401 Q02401]
 +
** [http://www.uniprot.org/uniprot/P26257 P26257]
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** [http://www.uniprot.org/uniprot/Q59422 Q59422]
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** [http://www.uniprot.org/uniprot/P30812 P30812]
 +
** [http://www.uniprot.org/uniprot/Q12660 Q12660]
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** [http://www.uniprot.org/uniprot/P45582 P45582]
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** [http://www.uniprot.org/uniprot/P49676 P49676]
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** [http://www.uniprot.org/uniprot/Q9SCV3 Q9SCV3]
 +
** [http://www.uniprot.org/uniprot/Q9SZI5 Q9SZI5]
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** [http://www.uniprot.org/uniprot/O81100 O81100]
 +
** [http://www.uniprot.org/uniprot/Q42150 Q42150]
 +
** [http://www.uniprot.org/uniprot/P48980 P48980]
 +
** [http://www.uniprot.org/uniprot/P48981 P48981]
 +
** [http://www.uniprot.org/uniprot/O86616 O86616]
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** [http://www.uniprot.org/uniprot/P70753 P70753]
 +
** [http://www.uniprot.org/uniprot/P29853 P29853]
 +
** [http://www.uniprot.org/uniprot/P94804 P94804]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=polyprotein}}
 +
{{#set: common name=glycoside_hydrolase}}
 +
{{#set: ec number=EC-3.2.1.23}}
 +
{{#set: gene associated=Tiso_gene_12839|Tiso_gene_17558|Tiso_gene_1398}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:40, 21 March 2018

Reaction 3.2.1.23-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyprotein
    • glycoside_hydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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