Difference between revisions of "Tiso gene 6558"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** atp-dependent_rna_helicase_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12626 RXN-12626] == * direction: ** LEFT-TO-RIGHT * common name: ** chitotriose β-N-acetyl...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12626 RXN-12626] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** atp-dependent_rna_helicase_ded1
+
** chitotriose β-N-acetylglucosaminidase
−
** rna_helicase
+
** beta-hexosaminidase
−
** dead_box_rna_helicase
+
−
** ORF
+
−
** dead_box_helicase
+
−
** atp-dependent_rna_helicase-like_protein_db10
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
+
** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Wound-RNA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Unwound-RNA]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CPD-13227]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CHITOBIOSE]][c] '''+''' 1 [[N-acetyl-D-glucosamine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 wound RNA[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an unwound RNA[c] '''+''' 1 H+[c]
+
** 1 N,N',N''-triacetylchitotriose[c] '''+''' 1 H2O[c] '''=>''' 1 N,N'-diacetylchitobiose[c] '''+''' 1 N-acetyl-D-glucosamine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13862]]
+
* Gene: [[Tiso_gene_1129]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_14122]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15465]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11551]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_5272]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17804]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9370]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_13864]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14774]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17819]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13863]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6902]], chitin degradation II (Vibrio): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6902 PWY-6902]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=atp-dependent_rna_helicase_ded1}}
+
{{#set: common name=chitotriose β-N-acetylglucosaminidase}}
−
{{#set: common name=rna_helicase}}
+
{{#set: common name=beta-hexosaminidase}}
−
{{#set: common name=dead_box_rna_helicase}}
+
{{#set: ec number=EC-3.2.1.52}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_1129|Tiso_gene_14122}}
−
{{#set: common name=dead_box_helicase}}
+
{{#set: in pathway=PWY-6902}}
−
{{#set: common name=atp-dependent_rna_helicase-like_protein_db10}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: ec number=EC-3.6.4.13}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: gene associated=Tiso_gene_13862|Tiso_gene_15465|Tiso_gene_11551|Tiso_gene_5272|Tiso_gene_17804|Tiso_gene_9370|Tiso_gene_13864|Tiso_gene_14774|Tiso_gene_17819|Tiso_gene_13863}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:40, 21 March 2018

Reaction RXN-12626

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • chitotriose β-N-acetylglucosaminidase
    • beta-hexosaminidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6902, chitin degradation II (Vibrio): PWY-6902
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6558&oldid=35573"