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| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPREDUCT-RXN UDPREDUCT-RXN] == | + | == Gene Tiso_gene_6869 == |
| − | * direction:
| + | |
| − | ** LEFT-TO-RIGHT
| + | |
| − | * common name:
| + | |
| − | ** ribonucleoside-diphosphate_reductase
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * Reaction: [[2.4.1.213-RXN]] |
| − | ** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[DUDP]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 a reduced thioredoxin[c] '''+''' 1 UDP[c] '''=>''' 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c] '''+''' 1 dUDP[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_9915]] | + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_10617]]
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_10138]]
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_9916]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
| + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
| + | |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
| + | |
| − | ** '''12''' reactions found over '''17''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| | ** Source: [[orthology-synechocystis]] | | ** Source: [[orthology-synechocystis]] |
| − | *** Tool: [[pantograph]] | + | * Reaction: [[TREHALOSE6PSYN-RXN]] |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: automated-name-match |
| − | ** Source: [[annotation-experimental_annotation]] | + | == Pathways associated == |
| − | *** Tool: [[pathwaytools]]
| + | * [[TRESYN-PWY]] |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: reaction associated=2.4.1.213-RXN|TREHALOSE6PSYN-RXN}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28026 28026]
| + | {{#set: pathway associated=TRESYN-PWY}} |
| − | * LIGAND-RXN:
| + | |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02018 R02018]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=ribonucleoside-diphosphate_reductase}}
| + | |
| − | {{#set: ec number=EC-1.17.4.1}}
| + | |
| − | {{#set: gene associated=Tiso_gene_9915|Tiso_gene_10617|Tiso_gene_10138|Tiso_gene_9916}}
| + | |
| − | {{#set: in pathway=PWY-7184|PWY-6545|PWY0-166}} | + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
