Difference between revisions of "RXN-11334"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] == * direction: ** REVERSIBLE * common name: ** isocitrate_lyase...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7066 CPD-7066] == * smiles: ** CC(C(=O)[O-])C(O)C([O-])=O * common name: ** (2R,3S)-3-methy...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCIT-CLEAV-RXN ISOCIT-CLEAV-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7066 CPD-7066] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** CC(C(=O)[O-])C(O)C([O-])=O
 
* common name:
 
* common name:
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** isocitrate_lyase
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** (2R,3S)-3-methylmalate
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/4.1.3.1 EC-4.1.3.1]
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** InChIKey=NPYQJIHHTGFBLN-STHAYSLISA-L
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* molecular weight:
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** 146.099   
 
* Synonym(s):
 
* Synonym(s):
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** D-erythro-3-methylmalate
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** erythro-β-methyl-D-malate
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** β-erythro-methylmalate
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** β-methyl-D-malate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN-7745]]
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** 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[GLYOX]][c] '''+''' 1 [[SUC]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 D-threo-isocitrate[c] '''<=>''' 1 glyoxylate[c] '''+''' 1 succinate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14008]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13245 13245]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266666 45266666]
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* PIR:
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* CHEBI:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41338 A41338]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58511 58511]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40713 I40713]
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* LIGAND-CPD:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JA0155 JA0155]
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** [http://www.genome.jp/dbget-bin/www_bget?C06029 C06029]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC6182 JC6182]
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{{#set: smiles=CC(C(=O)[O-])C(O)C([O-])=O}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26857 S26857]
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{{#set: common name=(2R,3S)-3-methylmalate}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26858 S26858]
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{{#set: inchi key=InChIKey=NPYQJIHHTGFBLN-STHAYSLISA-L}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39953 S39953]
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{{#set: molecular weight=146.099    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52819 S52819]
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{{#set: common name=D-erythro-3-methylmalate|erythro-&beta;-methyl-D-malate|&beta;-erythro-methylmalate|&beta;-methyl-D-malate}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S77654 S77654]
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{{#set: consumed by=RXN-7745}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04115 T04115]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06353 T06353]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07631 T07631]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07632 T07632]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08046 T08046]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09774 T09774]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09779 T09779]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T11209 T11209]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZBYI WZBYI]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCKI WZCKI]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCNIU WZCNIU]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZCSI WZCSI]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZECIC WZECIC]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=WZRPI WZRPI]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00479 R00479]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P28467 P28467]
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** [http://www.uniprot.org/uniprot/P42449 P42449]
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** [http://www.uniprot.org/uniprot/P20699 P20699]
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** [http://www.uniprot.org/uniprot/O13439 O13439]
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** [http://www.uniprot.org/uniprot/P28299 P28299]
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** [http://www.uniprot.org/uniprot/Q12031 Q12031]
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** [http://www.uniprot.org/uniprot/P46831 P46831]
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** [http://www.uniprot.org/uniprot/O24588 O24588]
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** [http://www.uniprot.org/uniprot/P49297 P49297]
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** [http://www.uniprot.org/uniprot/P45456 P45456]
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** [http://www.uniprot.org/uniprot/P45457 P45457]
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** [http://www.uniprot.org/uniprot/Q39577 Q39577]
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** [http://www.uniprot.org/uniprot/Q41084 Q41084]
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** [http://www.uniprot.org/uniprot/Q43097 Q43097]
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** [http://www.uniprot.org/uniprot/P28240 P28240]
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** [http://www.uniprot.org/uniprot/P20014 P20014]
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** [http://www.uniprot.org/uniprot/P17069 P17069]
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** [http://www.uniprot.org/uniprot/P15479 P15479]
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** [http://www.uniprot.org/uniprot/P0A9G6 P0A9G6]
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** [http://www.uniprot.org/uniprot/P25248 P25248]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=isocitrate_lyase}}
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{{#set: ec number=EC-4.1.3.1}}
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{{#set: gene associated=Tiso_gene_14008}}
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{{#set: in pathway=P105-PWY|GLYOXYLATE-BYPASS|PWY-6969}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:45, 21 March 2018

Metabolite CPD-7066

  • smiles:
    • CC(C(=O)[O-])C(O)C([O-])=O
  • common name:
    • (2R,3S)-3-methylmalate
  • inchi key:
    • InChIKey=NPYQJIHHTGFBLN-STHAYSLISA-L
  • molecular weight:
    • 146.099
  • Synonym(s):
    • D-erythro-3-methylmalate
    • erythro-β-methyl-D-malate
    • β-erythro-methylmalate
    • β-methyl-D-malate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CC(C(=O)[O-])C(O)C([O-])=O" cannot be used as a page name in this wiki.



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