Difference between revisions of "Tiso gene 8389"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBODEHYDRAT-RXN CARBODEHYDRAT-RXN] == * direction: ** REVERSIBLE * common name: ** carbonic_anhyd...")
(Created page with "Category:Gene == Gene Tiso_gene_2448 == * right end position: ** 6403 * transcription direction: ** POSITIVE * left end position: ** 4639 * centisome position: ** 23.90621...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBODEHYDRAT-RXN CARBODEHYDRAT-RXN] ==
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== Gene Tiso_gene_2448 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 6403
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* common name:
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* transcription direction:
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** carbonic_anhydrase
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** POSITIVE
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** ORF
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* left end position:
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** beta-type_carbonic_anhydrase
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** 4639
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** gamma_carbonic_anhydrase
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* centisome position:
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** alpha_ca
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** 23.90621   
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.1 EC-4.2.1.1]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[H2CO3]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 carbonic acid[c] '''<=>''' 1 CO2[c] '''+''' 1 H2O[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_19413]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12196]]
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* [[Tiso_gene_1600]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN0-5462]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_19414]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_7660]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_18927]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17511]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9852]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3056]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_20230]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6150]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6403}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10748 10748]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4639}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00132 R00132]
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{{#set: centisome position=23.90621    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P07450 P07450]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P07452 P07452]
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** [http://www.uniprot.org/uniprot/P13634 P13634]
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** [http://www.uniprot.org/uniprot/P08060 P08060]
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** [http://www.uniprot.org/uniprot/P16016 P16016]
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** [http://www.uniprot.org/uniprot/P20507 P20507]
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** [http://www.uniprot.org/uniprot/P16015 P16015]
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** [http://www.uniprot.org/uniprot/P40881 P40881]
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** [http://www.uniprot.org/uniprot/Q7LZP1 Q7LZP1]
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** [http://www.uniprot.org/uniprot/Q8X938 Q8X938]
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** [http://www.uniprot.org/uniprot/P00921 P00921]
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** [http://www.uniprot.org/uniprot/P00917 P00917]
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** [http://www.uniprot.org/uniprot/P00915 P00915]
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** [http://www.uniprot.org/uniprot/P00918 P00918]
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** [http://www.uniprot.org/uniprot/P07451 P07451]
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** [http://www.uniprot.org/uniprot/P22748 P22748]
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** [http://www.uniprot.org/uniprot/P35218 P35218]
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** [http://www.uniprot.org/uniprot/P43166 P43166]
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** [http://www.uniprot.org/uniprot/P00916 P00916]
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** [http://www.uniprot.org/uniprot/P00920 P00920]
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** [http://www.uniprot.org/uniprot/P00922 P00922]
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** [http://www.uniprot.org/uniprot/O24855 O24855]
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** [http://www.uniprot.org/uniprot/Q9PIQ7 Q9PIQ7]
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** [http://www.uniprot.org/uniprot/P14141 P14141]
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** [http://www.uniprot.org/uniprot/P43165 P43165]
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** [http://www.uniprot.org/uniprot/P07630 P07630]
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** [http://www.uniprot.org/uniprot/P27139 P27139]
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** [http://www.uniprot.org/uniprot/P35219 P35219]
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** [http://www.uniprot.org/uniprot/Q7M317 Q7M317]
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** [http://www.uniprot.org/uniprot/Q7M316 Q7M316]
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** [http://www.uniprot.org/uniprot/P0ABE9 P0ABE9]
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** [http://www.uniprot.org/uniprot/P18761 P18761]
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** [http://www.uniprot.org/uniprot/P17067 P17067]
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** [http://www.uniprot.org/uniprot/P23589 P23589]
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** [http://www.uniprot.org/uniprot/P24258 P24258]
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** [http://www.uniprot.org/uniprot/P27140 P27140]
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** [http://www.uniprot.org/uniprot/P27134 P27134]
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** [http://www.uniprot.org/uniprot/P46510 P46510]
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** [http://www.uniprot.org/uniprot/P46511 P46511]
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** [http://www.uniprot.org/uniprot/P46512 P46512]
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** [http://www.uniprot.org/uniprot/P46281 P46281]
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** [http://www.uniprot.org/uniprot/P18915 P18915]
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** [http://www.uniprot.org/uniprot/Q41728 Q41728]
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** [http://www.uniprot.org/uniprot/Q41729 Q41729]
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** [http://www.uniprot.org/uniprot/P27141 P27141]
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** [http://www.uniprot.org/uniprot/Q40628 Q40628]
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** [http://www.uniprot.org/uniprot/Q08056 Q08056]
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** [http://www.uniprot.org/uniprot/P40880 P40880]
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** [http://www.uniprot.org/uniprot/Q39588 Q39588]
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** [http://www.uniprot.org/uniprot/P93108 P93108]
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** [http://www.uniprot.org/uniprot/Q92051 Q92051]
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** [http://www.uniprot.org/uniprot/O04855 O04855]
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** [http://www.uniprot.org/uniprot/Q41088 Q41088]
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** [http://www.uniprot.org/uniprot/Q41089 Q41089]
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** [http://www.uniprot.org/uniprot/P46513 P46513]
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** [http://www.uniprot.org/uniprot/O04846 O04846]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=carbonic_anhydrase}}
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{{#set: common name=ORF}}
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{{#set: common name=beta-type_carbonic_anhydrase}}
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{{#set: common name=gamma_carbonic_anhydrase}}
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{{#set: common name=alpha_ca}}
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{{#set: ec number=EC-4.2.1.1}}
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{{#set: gene associated=Tiso_gene_19413|Tiso_gene_1600|Tiso_gene_19414|Tiso_gene_7660|Tiso_gene_18927|Tiso_gene_17511|Tiso_gene_9852|Tiso_gene_3056|Tiso_gene_20230|Tiso_gene_6150}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:46, 21 March 2018

Gene Tiso_gene_2448

  • right end position:
    • 6403
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4639
  • centisome position:
    • 23.90621
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8389&oldid=36123"