Difference between revisions of "CPD-1137"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-KINASE-RXN CHOLINE-KINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** choline_e...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] == * direction: ** REVERSIBLE * common name: ** carbonic_anhydrase ** gamma_ca...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-KINASE-RXN CHOLINE-KINASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5224 RXN0-5224] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** choline_ethanolamine_kinase
+
** carbonic_anhydrase
 +
** gamma_carbonic_anhydrase
 +
** ORF
 +
** beta-type_carbonic_anhydrase
 +
** alpha_ca
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.32 EC-2.7.1.32]
+
** [http://enzyme.expasy.org/EC/4.2.1.1 EC-4.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CHOLINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[HCO3]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 choline[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 phosphocholine[c] '''+''' 1 ADP[c]
+
** 1 H+[c] '''+''' 1 hydrogencarbonate[c] '''<=>''' 1 CO2[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16805]]
+
* Gene: [[Tiso_gene_18927]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_6150]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1600]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3056]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9852]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17511]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19413]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20230]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19414]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7660]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7782]], plasmalogen biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7782 PWY-7782]
+
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
−
** '''7''' reactions found over '''16''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY3O-450]], phosphatidylcholine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-450 PWY3O-450]
+
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7818]], type IV lipoteichoic acid biosynthesis (S. pneumoniae): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7818 PWY-7818]
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
−
** '''1''' reactions found over '''19''' reactions in the full pathway
+
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
 +
* [[CYANCAT-PWY]], cyanate degradation: [http://metacyc.org/META/NEW-IMAGE?object=CYANCAT-PWY CYANCAT-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12837 12837]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10748 10748]
−
* LIGAND-RXN:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01021 R01021]
+
{{#set: common name=carbonic_anhydrase}}
−
* UNIPROT:
+
{{#set: common name=gamma_carbonic_anhydrase}}
−
** [http://www.uniprot.org/uniprot/P20485 P20485]
+
{{#set: common name=ORF}}
−
** [http://www.uniprot.org/uniprot/Q01134 Q01134]
+
{{#set: common name=beta-type_carbonic_anhydrase}}
−
** [http://www.uniprot.org/uniprot/Q42809 Q42809]
+
{{#set: common name=alpha_ca}}
−
** [http://www.uniprot.org/uniprot/Q42810 Q42810]
+
{{#set: ec number=EC-4.2.1.1}}
−
** [http://www.uniprot.org/uniprot/Q42811 Q42811]
+
{{#set: gene associated=Tiso_gene_18927|Tiso_gene_6150|Tiso_gene_1600|Tiso_gene_3056|Tiso_gene_9852|Tiso_gene_17511|Tiso_gene_19413|Tiso_gene_20230|Tiso_gene_19414|Tiso_gene_7660}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: in pathway=PWY-241|PWYQT-4429|PWY-7117|PWY-7115|PWY-6142|CYANCAT-PWY}}
−
{{#set: common name=choline_ethanolamine_kinase}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: ec number=EC-2.7.1.32}}
+
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: gene associated=Tiso_gene_16805}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: in pathway=PWY-7782|PWY3O-450|PWY-7818}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 15:46, 21 March 2018

Reaction RXN0-5224

  • direction:
    • REVERSIBLE
  • common name:
    • carbonic_anhydrase
    • gamma_carbonic_anhydrase
    • ORF
    • beta-type_carbonic_anhydrase
    • alpha_ca
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 hydrogencarbonate[c] <=> 1 CO2[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 2 reactions found over 5 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic): PWYQT-4429
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • CYANCAT-PWY, cyanate degradation: CYANCAT-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-1137&oldid=36160"