Difference between revisions of "RXN0-5257"

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(Created page with "Category:Gene == Gene Tiso_gene_5911 == * left end position: ** 3327 * transcription direction: ** NEGATIVE * right end position: ** 6643 * centisome position: ** 26.03897...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5911 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FARNESYLTRANSTRANSFERASE-RXN FARNESYLTRANSTRANSFERASE-RXN] ==
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* left end position:
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* direction:
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** 3327
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** farnesyltranstransferase
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* right end position:
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** geranylgeranyl_pyrophosphate_synthase
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** 6643
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.5.1.29 EC-2.5.1.29]
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** 26.038977   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[5-NUCLEOTID-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[FARNESYL-PP]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c]
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***automated-name-match
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* With common name(s):
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* [[AMP-DEPHOSPHORYLATION-RXN]]
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** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 geranylgeranyl diphosphate[c]
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** in-silico_annotation
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[NARP]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_7305]]
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* [[NRPH]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-14025]]
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* Gene: [[Tiso_gene_16284]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***automated-name-match
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*** Assignment: EC-NUMBER
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* [[RXN-14026]]
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** Source: [[annotation-experimental_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***automated-name-match
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** Source: [[orthology-athaliana]]
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* [[RXN-14227]]
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** Source: [[orthology-synechocystis]]
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** in-silico_annotation
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** Source: [[orthology-esiliculosus]]
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***automated-name-match
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== Pathways  ==
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* [[RXN-5841]]
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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** in-silico_annotation
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** '''3''' reactions found over '''8''' reactions in the full pathway
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***automated-name-match
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* [[PWY-7492]], paspaline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7492 PWY-7492]
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* [[RXN-7607]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-6659]], fusicoccin A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6659 PWY-6659]
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***automated-name-match
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[RXN-7609]]
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* [[PWY-6691]], plaunotol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6691 PWY-6691]
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** in-silico_annotation
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** '''1''' reactions found over '''3''' reactions in the full pathway
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***automated-name-match
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* [[PWY-5120]], geranylgeranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5120 PWY-5120]
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* [[XMPXAN-RXN]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-7517]], brassicicene C biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517]
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***automated-name-match
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Pathways associated ==
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* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
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* [[PWY-5381]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6607]]
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* [[PWY-7720]], ophiobolin F biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7720 PWY-7720]
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* [[PWY-7185]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7821]]
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== Reconstruction information  ==
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* [[SALVADEHYPOX-PWY]]
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* Category: [[orthology]]
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* [[PWY-6596]]
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** Source: [[orthology-athaliana]]
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* [[NAD-BIOSYNTHESIS-II]]
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*** Tool: [[pantograph]]
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* [[PWY-6606]]
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** Source: [[orthology-synechocystis]]
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* [[PWY-6608]]
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*** Tool: [[pantograph]]
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* [[PWY-5695]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3327}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17653 17653]
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{{#set: right end position=6643}}
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* LIGAND-RXN:
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{{#set: centisome position=26.038977    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02061 R02061]
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{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|NARP|NRPH|RXN-14025|RXN-14026|RXN-14227|RXN-5841|RXN-7607|RXN-7609|XMPXAN-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|PWY-7821|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
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** [http://www.uniprot.org/uniprot/P39464 P39464]
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** [http://www.uniprot.org/uniprot/P24322 P24322]
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** [http://www.uniprot.org/uniprot/P80042 P80042]
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** [http://www.uniprot.org/uniprot/Q12051 Q12051]
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** [http://www.uniprot.org/uniprot/P95999 P95999]
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** [http://www.uniprot.org/uniprot/P48368 P48368]
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** [http://www.uniprot.org/uniprot/P93227 P93227]
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** [http://www.uniprot.org/uniprot/P93228 P93228]
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** [http://www.uniprot.org/uniprot/Q42698 Q42698]
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** [http://www.uniprot.org/uniprot/Q43133 Q43133]
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** [http://www.uniprot.org/uniprot/Q42866 Q42866]
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** [http://www.uniprot.org/uniprot/P54976 P54976]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=farnesyltranstransferase}}
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{{#set: common name=geranylgeranyl_pyrophosphate_synthase}}
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{{#set: ec number=EC-2.5.1.29}}
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{{#set: gene associated=Tiso_gene_7305|Tiso_gene_16284}}
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{{#set: in pathway=PWY-7736|PWY-7492|PWY-6659|PWY-6691|PWY-5120|PWY-7517|PWY-7721|PWY-7720}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:46, 21 March 2018

Reaction FARNESYLTRANSTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • farnesyltranstransferase
    • geranylgeranyl_pyrophosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7492, paspaline biosynthesis: PWY-7492
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6659, fusicoccin A biosynthesis: PWY-6659
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6691, plaunotol biosynthesis: PWY-6691
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5120, geranylgeranyl diphosphate biosynthesis: PWY-5120
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7517, brassicicene C biosynthesis: PWY-7517
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7720, ophiobolin F biosynthesis: PWY-7720
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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