Difference between revisions of "RXN-16393"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.6-RXN 6.3.5.6-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamyl-tRNA(Gln) amid...")
(Created page with "Category:Gene == Gene Tiso_gene_2983 == * right end position: ** 17278 * transcription direction: ** NEGATIVE * left end position: ** 12463 * centisome position: ** 70.028...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.6-RXN 6.3.5.6-RXN] ==
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== Gene Tiso_gene_2983 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 17278
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* common name:
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* transcription direction:
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** Glutamyl-tRNA(Gln) amidotransferase subunit A
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.3.5.6 EC-6.3.5.6]
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** 12463
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* centisome position:
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** 70.028656   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12086]]
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** 1 [[ATP]][c] '''+''' 1 [[L-aspartyl-tRNAAsn]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Charged-ASN-tRNAs]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 an L-aspartyl-[tRNAAsn][c] '''+''' 1 H2O[c] '''+''' 1 L-glutamine[c] '''=>''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 an L-asparaginyl-[tRNAasn][c] '''+''' 1 ADP[c] '''+''' 1 L-glutamate[c]
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* Reaction: [[RXN-12579]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
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* [[Tiso_gene_9908]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_12219]]
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== Pathways associated ==
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** EXPERIMENTAL_ANNOTATION
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* [[LIPAS-PWY]]
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***AUTOMATED-NAME-MATCH
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* [[PWY-6857]]
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== Pathways  ==
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* [[PWY490-4]], L-asparagine biosynthesis III (tRNA-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-4 PWY490-4]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=17278}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14513 14513]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=12463}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04212 R04212]
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{{#set: centisome position=70.028656    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
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{{#set: common name=Glutamyl-tRNA(Gln) amidotransferase subunit A}}
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{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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{{#set: ec number=EC-6.3.5.6}}
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{{#set: gene associated=Tiso_gene_9908|Tiso_gene_12219}}
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{{#set: in pathway=PWY490-4}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:47, 21 March 2018

Gene Tiso_gene_2983

  • right end position:
    • 17278
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 12463
  • centisome position:
    • 70.028656
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16393&oldid=36317"