Difference between revisions of "6.3.5.6-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFITE-REDUCTASE-FERREDOXIN-RXN SULFITE-REDUCTASE-FERREDOXIN-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Gene == Gene Tiso_gene_3107 == * right end position: ** 4192 * transcription direction: ** POSITIVE * left end position: ** 1879 * centisome position: ** 10.77099...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFITE-REDUCTASE-FERREDOXIN-RXN SULFITE-REDUCTASE-FERREDOXIN-RXN] ==
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== Gene Tiso_gene_3107 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4192
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.8.7.1 EC-1.8.7.1]
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** POSITIVE
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* left end position:
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** 1879
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* centisome position:
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** 10.770994   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[FRUCTOKINASE-RXN]]
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** 8 [[PROTON]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''+''' 1 [[SO3]][c] '''=>''' 1 [[HS]][c] '''+''' 3 [[WATER]][c] '''+''' 6 [[Oxidized-ferredoxins]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 8 H+[c] '''+''' 6 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 sulfite[c] '''=>''' 1 hydrogen sulfide[c] '''+''' 3 H2O[c] '''+''' 6 an oxidized ferredoxin [iron-sulfur] cluster[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10247]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[SULFMETII-PWY]], sulfate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=SULFMETII-PWY SULFMETII-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Reaction: [[GLUCOKIN-RXN]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[HEXOKINASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[MANNKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY-3801]]
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* [[PWY-7385]]
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* [[PWY0-1182]]
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* [[SUCROSEUTIL2-PWY]]
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* [[PWY-4101]]
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* [[PWY-2722]]
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* [[PWY-2723]]
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* [[PWY-5384]]
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* [[P124-PWY]]
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* [[TREDEGLOW-PWY]]
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* [[PWY-621]]
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* [[PWY-6992]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[PWY-6140]]
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* [[PWY-5661]]
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* [[PWY-7238]]
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* [[GLYCOCAT-PWY]]
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* [[SUCUTIL-PWY]]
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* [[GLUCOSE1PMETAB-PWY]]
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* [[PWY-6531]]
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* [[PWY-5514]]
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* [[P122-PWY]]
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* [[PWY-3861]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=4192}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00859 R00859]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=1879}}
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** [http://www.uniprot.org/uniprot/O82802 O82802]
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{{#set: centisome position=10.770994    }}
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** [http://www.uniprot.org/uniprot/Q42590 Q42590]
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{{#set: reaction associated=FRUCTOKINASE-RXN|GLUCOKIN-RXN|HEXOKINASE-RXN|MANNKIN-RXN}}
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** [http://www.uniprot.org/uniprot/P72854 P72854]
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{{#set: pathway associated=PWY-3801|PWY-7385|PWY0-1182|SUCROSEUTIL2-PWY|PWY-4101|PWY-2722|PWY-2723|PWY-5384|P124-PWY|TREDEGLOW-PWY|PWY-621|PWY-6992|ANAGLYCOLYSIS-PWY|PWY-6140|PWY-5661|PWY-7238|GLYCOCAT-PWY|SUCUTIL-PWY|GLUCOSE1PMETAB-PWY|PWY-6531|PWY-5514|P122-PWY|PWY-3861}}
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** [http://www.uniprot.org/uniprot/O23813 O23813]
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** [http://www.uniprot.org/uniprot/Q9LZ66 Q9LZ66]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.8.7.1}}
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{{#set: gene associated=Tiso_gene_10247}}
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{{#set: in pathway=SULFMETII-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 15:48, 21 March 2018

Gene Tiso_gene_3107

  • right end position:
    • 4192
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1879
  • centisome position:
    • 10.770994
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=6.3.5.6-RXN&oldid=36347"