Difference between revisions of "CPD-592"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] == * direction:...")
(Created page with "Category:Gene == Gene Tiso_gene_13488 == * right end position: ** 5314 * transcription direction: ** NEGATIVE * left end position: ** 2489 * centisome position: ** 39.7667...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] ==
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== Gene Tiso_gene_13488 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5314
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* common name:
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* transcription direction:
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** glutarate-semialdehyde_dehydrogenase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.2.1.24 EC-1.2.1.24]
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** 2489
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* centisome position:
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** 39.766735   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.4.11.9-RXN]]
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** 1 [[SUCC-S-ALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SUC]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 succinate semialdehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 succinate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_777]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_91]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_6952]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6473]], 4-aminobutanoate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5314}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13217 13217]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2489}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00713 R00713]
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{{#set: centisome position=39.766735    }}
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* UNIPROT:
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{{#set: reaction associated=3.4.11.9-RXN}}
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** [http://www.uniprot.org/uniprot/P51649 P51649]
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** [http://www.uniprot.org/uniprot/P51650 P51650]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutarate-semialdehyde_dehydrogenase}}
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{{#set: ec number=EC-1.2.1.24}}
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{{#set: gene associated=Tiso_gene_777|Tiso_gene_91|Tiso_gene_6952}}
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{{#set: in pathway=PWY-6473|PWY-6535|GLUDEG-I-PWY|PWY-4321}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:49, 21 March 2018

Gene Tiso_gene_13488

  • right end position:
    • 5314
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2489
  • centisome position:
    • 39.766735
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-592&oldid=36503"