Difference between revisions of "Tiso gene 13488"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** exostosin-1 ** prob...")
(Created page with "Category:Gene == Gene Tiso_gene_15416 == * right end position: ** 2370 * transcription direction: ** POSITIVE * left end position: ** 3 * centisome position: ** 5.96421500...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN] ==
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== Gene Tiso_gene_15416 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2370
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* common name:
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* transcription direction:
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** exostosin-1
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** POSITIVE
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** probable_glycosyltransferase
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* left end position:
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* ec number:
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** 3
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** [http://enzyme.expasy.org/EC/2.4.1.224 EC-2.4.1.224]
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* centisome position:
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** 5.964215000e-2
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-1281]]
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** 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core]][c] '''+''' 1 [[UDP]][c]
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* With common name(s):
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** 1 a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine[c] '''=>''' 1 H+[c] '''+''' 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_6495]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6496]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=2370}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07334 R07334]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=3}}
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{{#set: common name=exostosin-1}}
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{{#set: centisome position=5.964215000e-2}}
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{{#set: common name=probable_glycosyltransferase}}
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{{#set: reaction associated=RXN0-1281}}
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{{#set: ec number=EC-2.4.1.224}}
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{{#set: gene associated=Tiso_gene_6495|Tiso_gene_6496}}
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{{#set: in pathway=PWY-6558}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:49, 21 March 2018

Gene Tiso_gene_15416

  • right end position:
    • 2370
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3
  • centisome position:
    • 5.964215000e-2
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13488&oldid=36529"