Difference between revisions of "R-2-Hydroxyacids"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10959 RXN-10959] == * direction: ** LEFT-TO-RIGHT * common name: ** type_i_inositol-_-bisphosph...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** exostosin-1 ** prob...") |
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| Line 1: | Line 1: | ||
[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.224-RXN 2.4.1.224-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** exostosin-1 |
| − | ** | + | ** probable_glycosyltransferase |
* ec number: | * ec number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.4.1.224 EC-2.4.1.224] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core]][c] '''+''' 1 [[UDP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 D- | + | ** 1 a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine[c] '''=>''' 1 H+[c] '''+''' 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[Tiso_gene_6495]] |
| − | ** | + | ** Source: [[annotation-in-silico_annotation]] |
| − | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
| − | * [[ | + | * Gene: [[Tiso_gene_6496]] |
| − | ** | + | ** Source: [[annotation-in-silico_annotation]] |
| − | + | *** Assignment: EC-NUMBER | |
| − | + | ||
| − | + | ||
| − | ***EC-NUMBER | + | |
== Pathways == | == Pathways == | ||
| + | * [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558] | ||
| + | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 33: | Line 32: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R07334 R07334] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: common name= | + | {{#set: common name=exostosin-1}} |
| − | {{#set: common name= | + | {{#set: common name=probable_glycosyltransferase}} |
| − | {{#set: ec number=EC- | + | {{#set: ec number=EC-2.4.1.224}} |
| − | {{#set: gene associated= | + | {{#set: gene associated=Tiso_gene_6495|Tiso_gene_6496}} |
| − | {{#set: in pathway=}} | + | {{#set: in pathway=PWY-6558}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-in-silico_annotation}} | {{#set: reconstruction source=annotation-in-silico_annotation}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
Revision as of 15:49, 21 March 2018
Contents
Reaction 2.4.1.224-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- exostosin-1
- probable_glycosyltransferase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein[c] + 1 UDP-N-ACETYL-D-GLUCOSAMINE[c] => 1 PROTON[c] + 1 GlcNAc-GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Core[c] + 1 UDP[c]
- With common name(s):
- 1 a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] + 1 UDP-N-acetyl-α-D-glucosamine[c] => 1 H+[c] + 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] + 1 UDP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_6495
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6496
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
- 3 reactions found over 13 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- LIGAND-RXN:
