Difference between revisions of "Tiso gene 17185"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-308 RXN0-308] == * direction: ** LEFT-TO-RIGHT * common name: ** cysteine_mitochondrial ** cys...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** threonine_alanine_trna_ligase_subfamily_protein |
− | ** | + | ** ORF |
+ | ** alanyl-trna_synthetase | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.7 EC-6.1.1.7] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 L- | + | ** 1 L-alanine[c] '''+''' 1 a tRNAala[c] '''+''' 1 ATP[c] '''+''' 1 H+[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-alanyl-[tRNAala][c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_2298]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | ** | + | ** Source: [[orthology-esiliculosus]] |
− | ***EC-NUMBER | + | * Gene: [[Tiso_gene_3249]] |
− | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | * [[ | + | *** Assignment: EC-NUMBER |
− | ** | + | ** Source: [[annotation-experimental_annotation]] |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | ** [[ | + | ** Source: [[orthology-esiliculosus]] |
− | * [[ | + | * Gene: [[Tiso_gene_18607]] |
− | + | ** Source: [[annotation-in-silico_annotation]] | |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | ** | + | ** Source: [[annotation-experimental_annotation]] |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | ** [[ | + | * Gene: [[Tiso_gene_18609]] |
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_19573]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] |
− | + | ** '''21''' reactions found over '''21''' reactions in the full pathway | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | ** ''' | + | |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
Line 48: | Line 49: | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
− | |||
− | |||
** Source: [[annotation-experimental_annotation]] | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12540 12540] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P56452 P56452] | ||
+ | ** [http://www.uniprot.org/uniprot/O27718 O27718] | ||
+ | ** [http://www.uniprot.org/uniprot/O34526 O34526] | ||
+ | ** [http://www.uniprot.org/uniprot/P47534 P47534] | ||
+ | ** [http://www.uniprot.org/uniprot/O58035 O58035] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57984 Q57984] | ||
+ | ** [http://www.uniprot.org/uniprot/O51238 O51238] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0] | ||
+ | ** [http://www.uniprot.org/uniprot/O83980 O83980] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5] | ||
+ | ** [http://www.uniprot.org/uniprot/O67323 O67323] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714] | ||
+ | ** [http://www.uniprot.org/uniprot/P49588 P49588] | ||
+ | ** [http://www.uniprot.org/uniprot/P43815 P43815] | ||
+ | ** [http://www.uniprot.org/uniprot/P50475 P50475] | ||
+ | ** [http://www.uniprot.org/uniprot/P24075 P24075] | ||
+ | ** [http://www.uniprot.org/uniprot/P27866 P27866] | ||
+ | ** [http://www.uniprot.org/uniprot/P35029 P35029] | ||
+ | ** [http://www.uniprot.org/uniprot/P40825 P40825] | ||
+ | ** [http://www.uniprot.org/uniprot/P75368 P75368] | ||
+ | ** [http://www.uniprot.org/uniprot/Q48976 Q48976] | ||
+ | ** [http://www.uniprot.org/uniprot/P00957 P00957] | ||
+ | ** [http://www.uniprot.org/uniprot/P21894 P21894] | ||
+ | ** [http://www.uniprot.org/uniprot/O50189 O50189] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=threonine_alanine_trna_ligase_subfamily_protein}} |
− | {{#set: common name= | + | {{#set: common name=ORF}} |
− | {{#set: ec number=EC- | + | {{#set: common name=alanyl-trna_synthetase}} |
− | {{#set: gene associated= | + | {{#set: ec number=EC-6.1.1.7}} |
− | {{#set: in pathway= | + | {{#set: gene associated=Tiso_gene_2298|Tiso_gene_3249|Tiso_gene_18607|Tiso_gene_18609|Tiso_gene_19573}} |
+ | {{#set: in pathway=TRNA-CHARGING-PWY}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction source=annotation- | + | {{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 15:50, 21 March 2018
Contents
Reaction ALANINE--TRNA-LIGASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- threonine_alanine_trna_ligase_subfamily_protein
- ORF
- alanyl-trna_synthetase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 L-ALPHA-ALANINE[c] + 1 ALA-tRNAs[c] + 1 ATP[c] + 1 PROTON[c] => 1 AMP[c] + 1 PROTON[c] + 1 PPI[c] + 1 Charged-ALA-tRNAs[c]
- With common name(s):
- 1 L-alanine[c] + 1 a tRNAala[c] + 1 ATP[c] + 1 H+[c] => 1 AMP[c] + 1 H+[c] + 1 diphosphate[c] + 1 an L-alanyl-[tRNAala][c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_2298
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_3249
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_18607
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_18609
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_19573
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- TRNA-CHARGING-PWY, tRNA charging: TRNA-CHARGING-PWY
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: