Difference between revisions of "Tiso gene 12198"

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(Created page with "Category:Gene == Gene Tiso_gene_3109 == * left end position: ** 9323 * transcription direction: ** NEGATIVE * right end position: ** 10945 * centisome position: ** 53.4422...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] == * direction: ** LEFT-TO-RIGHT...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_3109 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] ==
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* left end position:
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* direction:
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** 9323
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** polyketide_synthase
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* right end position:
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* ec number:
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** 10945
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** 53.442245   
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** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PEPTIDYLPROLYL-ISOMERASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[OH-ACYL-ACP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-2-enoyl-[acyl-carrier protein][c]
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***ec-number
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6884]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=9323}}
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* LIGAND-RXN:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R10208 R10208]
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{{#set: right end position=10945}}
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* UNIPROT:
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{{#set: centisome position=53.442245    }}
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** [http://www.uniprot.org/uniprot/P0A6Q3 P0A6Q3]
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{{#set: reaction associated=PEPTIDYLPROLYL-ISOMERASE-RXN}}
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** [http://www.uniprot.org/uniprot/P45159 P45159]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=polyketide_synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-4.2.1.59}}
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{{#set: gene associated=Tiso_gene_13394|Tiso_gene_135|Tiso_gene_6884|Tiso_gene_500|Tiso_gene_136|Tiso_gene_10876}}
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{{#set: in pathway=FASYN-ELONG-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:50, 21 March 2018

Reaction 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] => 1 H2O[c] + 1 a trans-2-enoyl-[acyl-carrier protein][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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