Difference between revisions of "GLYCERATE-DEHYDROGENASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11529 CPD-11529] == * smiles: ** CCC=CCC4(C(=O)CCC(CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Tra...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11529 CPD-11529] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=INORGPYROPHOSPHAT-RXN INORGPYROPHOSPHAT-RXN] ==
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* smiles:
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* direction:
−
** CCC=CCC4(C(=O)CCC(CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)
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** LEFT-TO-RIGHT
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* inchi key:
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−
** InChIKey=WQKKCPPNDKSAIU-PCDAEQFSSA-J
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* common name:
 
* common name:
−
** jasmonoyl-CoA
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** Transmembrane_protein
−
* molecular weight:
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** inorganic_pyrophosphatase
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** 955.76   
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** ORF
 +
** h+-translocating_pyrophosphatase
 +
** Inorganic pyrophosphatase
 +
** mitochondrial_carrier_protein
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.1.1 EC-3.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-10708]]
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* With identifiers:
−
== Reaction(s) known to produce the compound ==
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** 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c]
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* [[RXN-10701]]
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* With common name(s):
−
== Reaction(s) of unknown directionality ==
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** 1 diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 2 phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_2850]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6277]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15874]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16197]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_2851]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17878]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_16375]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9490]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_17879]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_7014]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_17889]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1110]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
== Pathways  ==
 +
* [[PWY-7805]], aminomethylphosphonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7805 PWY-7805]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7807]], glyphosate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7807 PWY-7807]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=44237154 44237154]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576]
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{{#set: smiles=CCC=CCC4(C(=O)CCC(CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)}}
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* LIGAND-RXN:
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{{#set: inchi key=InChIKey=WQKKCPPNDKSAIU-PCDAEQFSSA-J}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004]
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{{#set: common name=jasmonoyl-CoA}}
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* UNIPROT:
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{{#set: molecular weight=955.76    }}
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** [http://www.uniprot.org/uniprot/P21616 P21616]
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{{#set: consumed by=RXN-10708}}
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** [http://www.uniprot.org/uniprot/P31414 P31414]
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{{#set: produced by=RXN-10701}}
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** [http://www.uniprot.org/uniprot/P28239 P28239]
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** [http://www.uniprot.org/uniprot/P37980 P37980]
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** [http://www.uniprot.org/uniprot/P84491 P84491]
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** [http://www.uniprot.org/uniprot/O59570 O59570]
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** [http://www.uniprot.org/uniprot/Q9S941 Q9S941]
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** [http://www.uniprot.org/uniprot/Q9S939 Q9S939]
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** [http://www.uniprot.org/uniprot/Q9S936 Q9S936]
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** [http://www.uniprot.org/uniprot/O26363 O26363]
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** [http://www.uniprot.org/uniprot/Q9S940 Q9S940]
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** [http://www.uniprot.org/uniprot/Q9S938 Q9S938]
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** [http://www.uniprot.org/uniprot/Q9S937 Q9S937]
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** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9]
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** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24]
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** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3]
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** [http://www.uniprot.org/uniprot/P47593 P47593]
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** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8]
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** [http://www.uniprot.org/uniprot/O05724 O05724]
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** [http://www.uniprot.org/uniprot/P19514 P19514]
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** [http://www.uniprot.org/uniprot/P00817 P00817]
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** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9]
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** [http://www.uniprot.org/uniprot/P13998 P13998]
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** [http://www.uniprot.org/uniprot/P19117 P19117]
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** [http://www.uniprot.org/uniprot/P21216 P21216]
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** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3]
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** [http://www.uniprot.org/uniprot/P37981 P37981]
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** [http://www.uniprot.org/uniprot/Q43801 Q43801]
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** [http://www.uniprot.org/uniprot/Q43798 Q43798]
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** [http://www.uniprot.org/uniprot/Q43797 Q43797]
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** [http://www.uniprot.org/uniprot/P50308 P50308]
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** [http://www.uniprot.org/uniprot/Q43796 Q43796]
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** [http://www.uniprot.org/uniprot/P93409 P93409]
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** [http://www.uniprot.org/uniprot/Q8H616 Q8H616]
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** [http://www.uniprot.org/uniprot/P93410 P93410]
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** [http://www.uniprot.org/uniprot/P75250 P75250]
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** [http://www.uniprot.org/uniprot/Q49071 Q49071]
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** [http://www.uniprot.org/uniprot/O48556 O48556]
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** [http://www.uniprot.org/uniprot/O22537 O22537]
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** [http://www.uniprot.org/uniprot/O82793 O82793]
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** [http://www.uniprot.org/uniprot/O23979 O23979]
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** [http://www.uniprot.org/uniprot/O49949 O49949]
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** [http://www.uniprot.org/uniprot/Q43187 Q43187]
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** [http://www.uniprot.org/uniprot/O22124 O22124]
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** [http://www.uniprot.org/uniprot/Q42650 Q42650]
 +
** [http://www.uniprot.org/uniprot/Q42651 Q42651]
 +
** [http://www.uniprot.org/uniprot/O65151 O65151]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Transmembrane_protein}}
 +
{{#set: common name=inorganic_pyrophosphatase}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=h+-translocating_pyrophosphatase}}
 +
{{#set: common name=Inorganic pyrophosphatase}}
 +
{{#set: common name=mitochondrial_carrier_protein}}
 +
{{#set: ec number=EC-3.6.1.1}}
 +
{{#set: gene associated=Tiso_gene_2850|Tiso_gene_6277|Tiso_gene_15874|Tiso_gene_16197|Tiso_gene_2851|Tiso_gene_17878|Tiso_gene_16375|Tiso_gene_9490|Tiso_gene_17879|Tiso_gene_7014|Tiso_gene_17889|Tiso_gene_1110}}
 +
{{#set: in pathway=PWY-7805|PWY-7807}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:50, 21 March 2018

Reaction INORGPYROPHOSPHAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Transmembrane_protein
    • inorganic_pyrophosphatase
    • ORF
    • h+-translocating_pyrophosphatase
    • Inorganic pyrophosphatase
    • mitochondrial_carrier_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 diphosphate[c] + 1 H2O[c] => 1 H+[c] + 2 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7805, aminomethylphosphonate degradation: PWY-7805
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-7807, glyphosate degradation III: PWY-7807
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GLYCERATE-DEHYDROGENASE-RXN&oldid=36700"