Difference between revisions of "Aryl-Dialkyl-Phosphate"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] == * direction: ** LEFT-TO-RIGHT * common name: ** proline,2-oxoglutarate-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROTPDECARB-RXN OROTPDECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.23 EC-4.1.1.23]
+
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
* Synonym(s):
 
* Synonym(s):
 +
** prolyl hydroxylase
 +
** prolyl 4-hydroxylase
 +
** proline,2-oxoglutarate 4-dioxygenase
 +
** proline hydroxylase
 +
** protocollagen hydroxylase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[OROTIDINE-5-PHOSPHATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[UMP]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 orotidine 5'-phosphate[c] '''=>''' 1 CO2[c] '''+''' 1 UMP[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 L-proline[c] '''+''' 1 oxygen[c] '''=>''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 trans-4-hydroxy-L-proline[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_20050]]
+
* Gene: [[Tiso_gene_6296]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_18647]]
+
* Gene: [[Tiso_gene_16842]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_9636]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3021]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18689]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15328]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9035]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13008]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_15594]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9873]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18208]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9455]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_16122]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2158]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17919]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17823]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18933]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9227]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18145]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_292]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2280]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1468]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18235]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19638]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9165]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17593]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8652]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-synechocystis]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
Line 37: Line 88:
 
* Category: [[manual]]
 
* Category: [[manual]]
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11596 11596]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00965 R00965]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P11172 P11172]
+
−
** [http://www.uniprot.org/uniprot/Q9KQT7 Q9KQT7]
+
−
** [http://www.uniprot.org/uniprot/Q9CFW9 Q9CFW9]
+
−
** [http://www.uniprot.org/uniprot/P24220 P24220]
+
−
** [http://www.uniprot.org/uniprot/P0A5M7 P0A5M7]
+
−
** [http://www.uniprot.org/uniprot/P43812 P43812]
+
−
** [http://www.uniprot.org/uniprot/Q9PIC1 Q9PIC1]
+
−
** [http://www.uniprot.org/uniprot/P10652 P10652]
+
−
** [http://www.uniprot.org/uniprot/P07817 P07817]
+
−
** [http://www.uniprot.org/uniprot/P03962 P03962]
+
−
** [http://www.uniprot.org/uniprot/P14017 P14017]
+
−
** [http://www.uniprot.org/uniprot/P07691 P07691]
+
−
** [http://www.uniprot.org/uniprot/P08244 P08244]
+
−
** [http://www.uniprot.org/uniprot/P13439 P13439]
+
−
** [http://www.uniprot.org/uniprot/P05035 P05035]
+
−
** [http://www.uniprot.org/uniprot/P09463 P09463]
+
−
** [http://www.uniprot.org/uniprot/P14964 P14964]
+
−
** [http://www.uniprot.org/uniprot/P21593 P21593]
+
−
** [http://www.uniprot.org/uniprot/P15188 P15188]
+
−
** [http://www.uniprot.org/uniprot/P07922 P07922]
+
−
** [http://www.uniprot.org/uniprot/P0A5M6 P0A5M6]
+
−
** [http://www.uniprot.org/uniprot/Q9JV18 Q9JV18]
+
−
** [http://www.uniprot.org/uniprot/P25971 P25971]
+
−
** [http://www.uniprot.org/uniprot/P46535 P46535]
+
−
** [http://www.uniprot.org/uniprot/P31754 P31754]
+
−
** [http://www.uniprot.org/uniprot/P32430 P32430]
+
−
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
+
−
** [http://www.uniprot.org/uniprot/P09556 P09556]
+
−
** [http://www.uniprot.org/uniprot/P21594 P21594]
+
−
** [http://www.uniprot.org/uniprot/Q06375 Q06375]
+
−
** [http://www.uniprot.org/uniprot/P41769 P41769]
+
−
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
+
−
** [http://www.uniprot.org/uniprot/Q59654 Q59654]
+
−
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
+
−
** [http://www.uniprot.org/uniprot/P48844 P48844]
+
−
** [http://www.uniprot.org/uniprot/P43230 P43230]
+
−
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
+
−
** [http://www.uniprot.org/uniprot/O74110 O74110]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.1.23}}
+
{{#set: common name=proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)}}
−
{{#set: gene associated=Tiso_gene_20050|Tiso_gene_18647}}
+
{{#set: ec number=EC-1.14.11}}
−
{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
+
{{#set: common name=prolyl hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|protocollagen hydroxylase}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: gene associated=Tiso_gene_6296|Tiso_gene_16842|Tiso_gene_9636|Tiso_gene_3021|Tiso_gene_18689|Tiso_gene_15328|Tiso_gene_9035|Tiso_gene_13008|Tiso_gene_15594|Tiso_gene_9873|Tiso_gene_18208|Tiso_gene_9455|Tiso_gene_16122|Tiso_gene_2158|Tiso_gene_17919|Tiso_gene_17823|Tiso_gene_18933|Tiso_gene_9227|Tiso_gene_18145|Tiso_gene_292|Tiso_gene_2280|Tiso_gene_1468|Tiso_gene_18235|Tiso_gene_19638|Tiso_gene_9165|Tiso_gene_17593|Tiso_gene_8652}}
−
{{#set: reconstruction source=manual-primary_network|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|manual-primary_network|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 16:51, 21 March 2018

Reaction RXN490-3641

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
  • ec number:
  • Synonym(s):
    • prolyl hydroxylase
    • prolyl 4-hydroxylase
    • proline,2-oxoglutarate 4-dioxygenase
    • proline hydroxylase
    • protocollagen hydroxylase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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