Difference between revisions of "RXN-14274"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CPD-315 TransportSeed_CPD-315] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Rea...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CPD-315 TransportSeed_CPD-315] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** riboflavin_biosynthesis_protein
 
* ec number:
 
** [http://enzyme.expasy.org/EC/3.5.4.26 EC-3.5.4.26]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
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** 1.0 [[CPD-315]][e] '''=>''' 1.0 [[CPD-315]][c]
 
* With common name(s):
 
* With common name(s):
** 1 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 5-amino-6-(5-phospho-D-ribosylamino)uracil[c]
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** 1.0 cyanocob(III)alamin[e] '''=>''' 1.0 cyanocob(III)alamin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[Tiso_gene_1389]]
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[orthology]]
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* Category: [[manual]]
** Source: [[orthology-athaliana]]
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** Source: [[manual-import_from_medium]]
*** Tool: [[pantograph]]
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*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21868 21868]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=riboflavin_biosynthesis_protein}}
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{{#set: in pathway=}}
{{#set: ec number=EC-3.5.4.26}}
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{{#set: reconstruction category=manual}}
{{#set: gene associated=Tiso_gene_1389}}
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{{#set: reconstruction source=manual-import_from_medium}}
{{#set: in pathway=RIBOSYN2-PWY}}
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:52, 21 March 2018

Reaction TransportSeed_CPD-315

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 cyanocob(III)alamin[e] => 1.0 cyanocob(III)alamin[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links