Difference between revisions of "2.7.11.20-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C5 C5] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C5 C5] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CHORISMATE-SYNTHASE-RXN CHORISMATE-SYNTHASE-RXN] ==
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* smiles:
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* direction:
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=PNWZQTONLRRPST-KLDRQJOASA-J
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* common name:
 
* common name:
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** undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine
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** chorismate_synthase
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* molecular weight:
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* ec number:
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** 1713.036   
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** [http://enzyme.expasy.org/EC/4.2.3.5 EC-4.2.3.5]
 
* Synonym(s):
 
* Synonym(s):
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** N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanyl-D-alanine-diphosphoundecaprenol
 
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** a peptidoglycan with cleaved N-acetyl-glucosamine
 
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** lipid intermediate I
 
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** undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide
 
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** lipid I
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[PHOSNACMURPENTATRANS-RXN]]
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** 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''=>''' 1 [[CHORISMATE]][c] '''+''' 1 [[Pi]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 5-enolpyruvoyl-shikimate 3-phosphate[c] '''=>''' 1 chorismate[c] '''+''' 1 phosphate[c]
 +
 
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_9630]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=52940090 52940090]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21020 21020]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61387 61387]
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** [http://www.genome.jp/dbget-bin/www_bget?R01714 R01714]
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* BIGG : uagmda
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P27793 P27793]
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** [http://www.genome.jp/dbget-bin/www_bget?C05897 C05897]
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** [http://www.uniprot.org/uniprot/P23353 P23353]
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C}}
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** [http://www.uniprot.org/uniprot/Q9JT81 Q9JT81]
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{{#set: inchi key=InChIKey=PNWZQTONLRRPST-KLDRQJOASA-J}}
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** [http://www.uniprot.org/uniprot/Q58575 Q58575]
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{{#set: common name=undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine}}
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** [http://www.uniprot.org/uniprot/P43875 P43875]
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{{#set: molecular weight=1713.036    }}
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** [http://www.uniprot.org/uniprot/Q9PM41 Q9PM41]
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{{#set: common name=N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate-D-alanyl-D-alanine-diphosphoundecaprenol|a peptidoglycan with cleaved N-acetyl-glucosamine|lipid intermediate I|undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide|lipid I}}
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** [http://www.uniprot.org/uniprot/Q9CET2 Q9CET2]
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{{#set: produced by=PHOSNACMURPENTATRANS-RXN}}
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** [http://www.uniprot.org/uniprot/P28777 P28777]
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** [http://www.uniprot.org/uniprot/Q42885 Q42885]
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** [http://www.uniprot.org/uniprot/Q42884 Q42884]
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** [http://www.uniprot.org/uniprot/P16280 P16280]
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** [http://www.uniprot.org/uniprot/P12008 P12008]
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** [http://www.uniprot.org/uniprot/O74413 O74413]
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** [http://www.uniprot.org/uniprot/Q12640 Q12640]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=chorismate_synthase}}
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{{#set: ec number=EC-4.2.3.5}}
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{{#set: gene associated=Tiso_gene_9630}}
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{{#set: in pathway=PWY-6163}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:55, 21 March 2018

Reaction CHORISMATE-SYNTHASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • chorismate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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