Difference between revisions of "Tiso gene 19041"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_2123 == * left end position: ** 504 * transcription direction: ** NEGATIVE * right end position: ** 6808 * centisome position: ** 2.4570982...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expa...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_2123 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALIC-NADP-RXN MALIC-NADP-RXN] ==
−
* left end position:
+
* direction:
−
** 504
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* ec number:
−
** NEGATIVE
+
** [http://enzyme.expasy.org/EC/1.1.1.40 EC-1.1.1.40]
−
* right end position:
+
−
** 6808
+
−
* centisome position:
+
−
** 2.4570982   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[MANNITOL-1-PHOSPHATASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[NADP]][c] '''+''' 1 [[MAL]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 1 NADP+[c] '''+''' 1 (S)-malate[c] '''=>''' 1 pyruvate[c] '''+''' 1 CO2[c] '''+''' 1 NADPH[c]
−
***ec-number
+
 
−
== Pathways associated ==
+
== Genes associated with this reaction  ==
−
* [[PWY-3881]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PWY-6531]]
+
* Gene: [[Tiso_gene_12200]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6675]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_12896]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=504}}
+
* RHEA:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18253 18253]
−
{{#set: right end position=6808}}
+
* LIGAND-RXN:
−
{{#set: centisome position=2.4570982    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
−
{{#set: reaction associated=MANNITOL-1-PHOSPHATASE-RXN}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY-3881|PWY-6531}}
+
** [http://www.uniprot.org/uniprot/P12628 P12628]
 +
** [http://www.uniprot.org/uniprot/P06801 P06801]
 +
** [http://www.uniprot.org/uniprot/P13697 P13697]
 +
** [http://www.uniprot.org/uniprot/P16243 P16243]
 +
** [http://www.uniprot.org/uniprot/O48656 O48656]
 +
** [http://www.uniprot.org/uniprot/P22178 P22178]
 +
** [http://www.uniprot.org/uniprot/P93139 P93139]
 +
** [http://www.uniprot.org/uniprot/P34105 P34105]
 +
** [http://www.uniprot.org/uniprot/P28227 P28227]
 +
** [http://www.uniprot.org/uniprot/P36444 P36444]
 +
** [http://www.uniprot.org/uniprot/P40927 P40927]
 +
** [http://www.uniprot.org/uniprot/P37223 P37223]
 +
** [http://www.uniprot.org/uniprot/P48163 P48163]
 +
** [http://www.uniprot.org/uniprot/Q16798 Q16798]
 +
** [http://www.uniprot.org/uniprot/O50015 O50015]
 +
** [http://www.uniprot.org/uniprot/O04935 O04935]
 +
** [http://www.uniprot.org/uniprot/O04936 O04936]
 +
** [http://www.uniprot.org/uniprot/P37222 P37222]
 +
** [http://www.uniprot.org/uniprot/Q42888 Q42888]
 +
** [http://www.uniprot.org/uniprot/Q42889 Q42889]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-1.1.1.40}}
 +
{{#set: gene associated=Tiso_gene_12200|Tiso_gene_6675|Tiso_gene_12896}}
 +
{{#set: in pathway=PWY-241|GLUCONEO-PWY|PWY-7117}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 16:00, 21 March 2018

Reaction MALIC-NADP-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADP+[c] + 1 (S)-malate[c] => 1 pyruvate[c] + 1 CO2[c] + 1 NADPH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 2 reactions found over 5 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 7 reactions found over 10 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19041&oldid=38003"