Difference between revisions of "Tiso gene 17130"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Gene == Gene Tiso_gene_7495 == * right end position: ** 9984 * transcription direction: ** POSITIVE * left end position: ** 7623 * centisome position: ** 68.65712...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] ==
+
== Gene Tiso_gene_7495 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 9984
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
** threonine--trna_ligase
+
* left end position:
−
* ec number:
+
** 7623
−
** [http://enzyme.expasy.org/EC/6.1.1.3 EC-6.1.1.3]
+
* centisome position:
 +
** 68.65712   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ASNSYNA-RXN]]
−
** 1 [[THR-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''=>''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 a tRNAthr[c] '''+''' 1 ATP[c] '''+''' 1 L-threonine[c] '''=>''' 1 an L-threonyl-[tRNAthr][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_13142]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4406]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
+
* Reaction: [[ASNSYNB-RXN]]
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pathwaytools]]
+
* Reaction: [[GLUTAMIN-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[ASPARAGINE-BIOSYNTHESIS]]
 +
* [[ASPARAGINESYN-PWY]]
 +
* [[GLUTAMINDEG-PWY]]
 +
* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=9984}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24624 24624]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=7623}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
+
{{#set: centisome position=68.65712    }}
−
* UNIPROT:
+
{{#set: reaction associated=ASNSYNA-RXN|ASNSYNB-RXN|GLUTAMIN-RXN}}
−
** [http://www.uniprot.org/uniprot/O83809 O83809]
+
{{#set: pathway associated=ASPARAGINE-BIOSYNTHESIS|ASPARAGINESYN-PWY|GLUTAMINDEG-PWY|CITRULBIO-PWY}}
−
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
+
−
** [http://www.uniprot.org/uniprot/P56071 P56071]
+
−
** [http://www.uniprot.org/uniprot/O58430 O58430]
+
−
** [http://www.uniprot.org/uniprot/P47615 P47615]
+
−
** [http://www.uniprot.org/uniprot/O05947 O05947]
+
−
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
+
−
** [http://www.uniprot.org/uniprot/O67583 O67583]
+
−
** [http://www.uniprot.org/uniprot/O27504 O27504]
+
−
** [http://www.uniprot.org/uniprot/O51662 O51662]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
+
−
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
+
−
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
+
−
** [http://www.uniprot.org/uniprot/P43014 P43014]
+
−
** [http://www.uniprot.org/uniprot/P46244 P46244]
+
−
** [http://www.uniprot.org/uniprot/P75225 P75225]
+
−
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
+
−
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
+
−
** [http://www.uniprot.org/uniprot/O04630 O04630]
+
−
** [http://www.uniprot.org/uniprot/P18255 P18255]
+
−
** [http://www.uniprot.org/uniprot/P18256 P18256]
+
−
** [http://www.uniprot.org/uniprot/P04801 P04801]
+
−
** [http://www.uniprot.org/uniprot/P07236 P07236]
+
−
** [http://www.uniprot.org/uniprot/P26639 P26639]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=threonine--trna_ligase}}
+
−
{{#set: ec number=EC-6.1.1.3}}
+
−
{{#set: gene associated=Tiso_gene_13142|Tiso_gene_4406}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 17:01, 21 March 2018

Gene Tiso_gene_7495

  • right end position:
    • 9984
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7623
  • centisome position:
    • 68.65712
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17130&oldid=38061"