Difference between revisions of "Tiso gene 17130"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Gene == Gene Tiso_gene_7495 == * right end position: ** 9984 * transcription direction: ** POSITIVE * left end position: ** 7623 * centisome position: ** 68.65712...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_7495 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9984
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** threonine--trna_ligase
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* left end position:
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* ec number:
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** 7623
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** [http://enzyme.expasy.org/EC/6.1.1.3 EC-6.1.1.3]
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* centisome position:
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** 68.65712   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASNSYNA-RXN]]
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** 1 [[THR-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''=>''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a tRNAthr[c] '''+''' 1 ATP[c] '''+''' 1 L-threonine[c] '''=>''' 1 an L-threonyl-[tRNAthr][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_13142]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4406]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[ASNSYNB-RXN]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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* Reaction: [[GLUTAMIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[ASPARAGINE-BIOSYNTHESIS]]
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* [[ASPARAGINESYN-PWY]]
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* [[GLUTAMINDEG-PWY]]
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* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9984}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24624 24624]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=7623}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
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{{#set: centisome position=68.65712    }}
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* UNIPROT:
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{{#set: reaction associated=ASNSYNA-RXN|ASNSYNB-RXN|GLUTAMIN-RXN}}
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** [http://www.uniprot.org/uniprot/O83809 O83809]
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{{#set: pathway associated=ASPARAGINE-BIOSYNTHESIS|ASPARAGINESYN-PWY|GLUTAMINDEG-PWY|CITRULBIO-PWY}}
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** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
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** [http://www.uniprot.org/uniprot/P56071 P56071]
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** [http://www.uniprot.org/uniprot/O58430 O58430]
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** [http://www.uniprot.org/uniprot/P47615 P47615]
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** [http://www.uniprot.org/uniprot/O05947 O05947]
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** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
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** [http://www.uniprot.org/uniprot/O67583 O67583]
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** [http://www.uniprot.org/uniprot/O27504 O27504]
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** [http://www.uniprot.org/uniprot/O51662 O51662]
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** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
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** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
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** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
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** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
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** [http://www.uniprot.org/uniprot/P43014 P43014]
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** [http://www.uniprot.org/uniprot/P46244 P46244]
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** [http://www.uniprot.org/uniprot/P75225 P75225]
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** [http://www.uniprot.org/uniprot/Q48989 Q48989]
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** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
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** [http://www.uniprot.org/uniprot/O04630 O04630]
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** [http://www.uniprot.org/uniprot/P18255 P18255]
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** [http://www.uniprot.org/uniprot/P18256 P18256]
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** [http://www.uniprot.org/uniprot/P04801 P04801]
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** [http://www.uniprot.org/uniprot/P07236 P07236]
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** [http://www.uniprot.org/uniprot/P26639 P26639]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=threonine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.3}}
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{{#set: gene associated=Tiso_gene_13142|Tiso_gene_4406}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:01, 21 March 2018

Gene Tiso_gene_7495

  • right end position:
    • 9984
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7623
  • centisome position:
    • 68.65712
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17130&oldid=38061"