Difference between revisions of "GLUTATHIONE-REDUCT-NADPH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] == * direction: ** REVERSIBLE * common name: ** isocitrate dehydrogenase (NADP+)...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15684 RXN-15684] == * direction: ** LEFT-TO-RIGHT * common name: ** FAD-dependent 3-benzyl-3,6...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9951 RXN-9951] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15684 RXN-15684] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** isocitrate dehydrogenase (NADP+)
+
** FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase
−
** ORF
+
** sulfhydryl_oxidase
 +
** sulfhydryl_oxidase_1
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.8.3.2 EC-1.8.3.2]
 
* Synonym(s):
 
* Synonym(s):
−
** oxalosuccinate decarboxylase
 
−
** oxalsuccinic decarboxylase
 
−
** isocitrate (NADP) dehydrogenase
 
−
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
−
** NADP-specific isocitrate dehydrogenase
 
−
** NADP-linked isocitrate dehydrogenase
 
−
** NADP isocitric dehydrogenase
 
−
** isocitrate dehydrogenase (NADP-dependent)
 
−
** NADP-dependent isocitric dehydrogenase
 
−
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
−
** NADP+-linked isocitrate dehydrogenase
 
−
** IDH (ambiguous)
 
−
** dual-cofactor-specific isocitrate dehydrogenase
 
−
** NADP+-ICDH
 
−
** NADP+-IDH
 
−
** IDP
 
−
** IDP1
 
−
** IDP2
 
−
** IDP3
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THREO-DS-ISO-CITRATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c]
+
** 1 [[CPD-17049]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-17050]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-threo-isocitrate[c] '''+''' 1 NADP+[c] '''<=>''' 1 oxalosuccinate[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c]
+
** 1 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 3-benzyl-3,6 -disulfide-6-(hydroxymethyl)-diketopiperazine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10809]]
+
* Gene: [[Tiso_gene_13846]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_17069]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_18262]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_16192]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_20164]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_7321]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_9472]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_20163]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_12069]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8416]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_3314]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13847]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4530]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_12454]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7533]], gliotoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7533 PWY-7533]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25588 25588]
+
{{#set: common name=FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase}}
−
* LIGAND-RXN:
+
{{#set: common name=sulfhydryl_oxidase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
+
{{#set: common name=sulfhydryl_oxidase_1}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: ec number=EC-1.8.3.2}}
−
{{#set: common name=isocitrate dehydrogenase (NADP+)}}
+
{{#set: gene associated=Tiso_gene_13846|Tiso_gene_17069|Tiso_gene_16192|Tiso_gene_20164|Tiso_gene_7321|Tiso_gene_9472|Tiso_gene_20163|Tiso_gene_12069|Tiso_gene_8416|Tiso_gene_3314|Tiso_gene_13847|Tiso_gene_4530|Tiso_gene_12454}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-7533}}
−
{{#set: common name=oxalosuccinate decarboxylase|oxalsuccinic decarboxylase|isocitrate (NADP) dehydrogenase|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|NADP-specific isocitrate dehydrogenase|NADP-linked isocitrate dehydrogenase|NADP isocitric dehydrogenase|isocitrate dehydrogenase (NADP-dependent)|NADP-dependent isocitric dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|NADP+-linked isocitrate dehydrogenase|IDH (ambiguous)|dual-cofactor-specific isocitrate dehydrogenase|NADP+-ICDH|NADP+-IDH|IDP|IDP1|IDP2|IDP3}}
+
−
{{#set: gene associated=Tiso_gene_10809|Tiso_gene_18262}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:01, 21 March 2018

Reaction RXN-15684

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase
    • sulfhydryl_oxidase
    • sulfhydryl_oxidase_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine[c] + 1 oxygen[c] => 1 hydrogen peroxide[c] + 1 3-benzyl-3,6 -disulfide-6-(hydroxymethyl)-diketopiperazine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7533, gliotoxin biosynthesis: PWY-7533
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GLUTATHIONE-REDUCT-NADPH-RXN&oldid=38163"