Difference between revisions of "RXN-7922"

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(Created page with "Category:Gene == Gene Tiso_gene_11960 == * left end position: ** 1867 * transcription direction: ** POSITIVE * right end position: ** 7013 * centisome position: ** 25.2365...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] == * direction: ** REVERSIBLE * common name: ** fructose-bisphosph...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_11960 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16ALDOLASE-RXN F16ALDOLASE-RXN] ==
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* left end position:
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* direction:
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** 1867
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** REVERSIBLE
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* transcription direction:
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* common name:
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** POSITIVE
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** fructose-bisphosphate_aldolase
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* right end position:
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* ec number:
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** 7013
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** [http://enzyme.expasy.org/EC/4.1.2.13 EC-4.1.2.13]
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* centisome position:
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** 25.23655   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN1F-20]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 fructose 1,6-bisphosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 glycerone phosphate[c]
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***ec-number
+
 
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* Gene: [[Tiso_gene_12272]]
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* [[PWY-5531]]
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** Source: [[annotation-in-silico_annotation]]
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* [[CHLOROPHYLL-SYN]]
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*** Assignment: EC-NUMBER
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* [[PWY-7159]]
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** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_65]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_9119]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14568]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9179]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9118]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
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* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
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* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=1867}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14729 14729]
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{{#set: right end position=7013}}
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* LIGAND-RXN:
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{{#set: centisome position=25.23655    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01068 R01068]
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{{#set: reaction associated=RXN1F-20}}
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* UNIPROT:
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{{#set: pathway associated=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
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** [http://www.uniprot.org/uniprot/Q7LZE8 Q7LZE8]
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** [http://www.uniprot.org/uniprot/Q7M2K6 Q7M2K6]
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** [http://www.uniprot.org/uniprot/P07764 P07764]
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** [http://www.uniprot.org/uniprot/Q9URB4 Q9URB4]
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** [http://www.uniprot.org/uniprot/P14223 P14223]
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** [http://www.uniprot.org/uniprot/Q07159 Q07159]
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** [http://www.uniprot.org/uniprot/P07752 P07752]
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** [http://www.uniprot.org/uniprot/P14540 P14540]
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** [http://www.uniprot.org/uniprot/P07341 P07341]
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** [http://www.uniprot.org/uniprot/P0AB71 P0AB71]
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** [http://www.uniprot.org/uniprot/P04075 P04075]
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** [http://www.uniprot.org/uniprot/P05062 P05062]
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** [http://www.uniprot.org/uniprot/P09972 P09972]
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** [http://www.uniprot.org/uniprot/P05064 P05064]
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** [http://www.uniprot.org/uniprot/P05063 P05063]
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** [http://www.uniprot.org/uniprot/P22197 P22197]
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** [http://www.uniprot.org/uniprot/P00883 P00883]
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** [http://www.uniprot.org/uniprot/P27995 P27995]
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** [http://www.uniprot.org/uniprot/P05065 P05065]
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** [http://www.uniprot.org/uniprot/P00884 P00884]
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** [http://www.uniprot.org/uniprot/P09117 P09117]
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** [http://www.uniprot.org/uniprot/P17784 P17784]
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** [http://www.uniprot.org/uniprot/P29356 P29356]
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** [http://www.uniprot.org/uniprot/P16096 P16096]
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** [http://www.uniprot.org/uniprot/P08440 P08440]
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** [http://www.uniprot.org/uniprot/P44429 P44429]
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** [http://www.uniprot.org/uniprot/P13243 P13243]
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** [http://www.uniprot.org/uniprot/O51401 O51401]
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** [http://www.uniprot.org/uniprot/P47269 P47269]
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** [http://www.uniprot.org/uniprot/Q9CED4 Q9CED4]
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** [http://www.uniprot.org/uniprot/Q9JW15 Q9JW15]
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** [http://www.uniprot.org/uniprot/Q59100 Q59100]
 +
** [http://www.uniprot.org/uniprot/Q59101 Q59101]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z5 Q7M4Z5]
 +
** [http://www.uniprot.org/uniprot/Q7M4Z4 Q7M4Z4]
 +
** [http://www.uniprot.org/uniprot/P19537 P19537]
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** [http://www.uniprot.org/uniprot/Q01516 Q01516]
 +
** [http://www.uniprot.org/uniprot/Q01517 Q01517]
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** [http://www.uniprot.org/uniprot/Q91384 Q91384]
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** [http://www.uniprot.org/uniprot/P52210 P52210]
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** [http://www.uniprot.org/uniprot/Q42690 Q42690]
 +
** [http://www.uniprot.org/uniprot/P53447 P53447]
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** [http://www.uniprot.org/uniprot/Q7LZE9 Q7LZE9]
 +
** [http://www.uniprot.org/uniprot/P53818 P53818]
 +
** [http://www.uniprot.org/uniprot/P46257 P46257]
 +
** [http://www.uniprot.org/uniprot/P46256 P46256]
 +
** [http://www.uniprot.org/uniprot/Q42476 Q42476]
 +
** [http://www.uniprot.org/uniprot/P75089 P75089]
 +
** [http://www.uniprot.org/uniprot/O22486 O22486]
 +
** [http://www.uniprot.org/uniprot/Q40677 Q40677]
 +
** [http://www.uniprot.org/uniprot/O65581 O65581]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ6 Q9SVJ6]
 +
** [http://www.uniprot.org/uniprot/P93565 P93565]
 +
** [http://www.uniprot.org/uniprot/P50923 P50923]
 +
** [http://www.uniprot.org/uniprot/O04975 O04975]
 +
** [http://www.uniprot.org/uniprot/P36580 P36580]
 +
** [http://www.uniprot.org/uniprot/P53444 P53444]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=fructose-bisphosphate_aldolase}}
 +
{{#set: ec number=EC-4.1.2.13}}
 +
{{#set: gene associated=Tiso_gene_12272|Tiso_gene_65|Tiso_gene_9119|Tiso_gene_14568|Tiso_gene_9179|Tiso_gene_9118}}
 +
{{#set: in pathway=PWY-1042|P341-PWY|PWY66-399|SUCSYN-PWY|GLYCOLYSIS|PWY-7385|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY-1861|PWY-6142|PWY-5484|P185-PWY|GLUCONEO-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:02, 21 March 2018

Reaction F16ALDOLASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • fructose-bisphosphate_aldolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
    • 5 reactions found over 9 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-7922&oldid=38234"