Difference between revisions of "RXN-9530"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] == * direction: ** REVERSIBLE * common name: ** ribulose-phosphate...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** ribulose-phosphate_-3_chloroplastic
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.1.3.1 EC-5.1.3.1]
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** [http://enzyme.expasy.org/EC/6.2.1 EC-6.2.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[CPD-730]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CPD-11517]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-ribulose 5-phosphate[c] '''<=>''' 1 D-xylulose 5-phosphate[c]
+
** 1 coenzyme A[c] '''+''' 1 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoate[c] '''+''' 1 ATP[c] '''=>''' 1 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4754]]
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* Gene: [[Tiso_gene_14183]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Gene: [[Tiso_gene_12275]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[Tiso_gene_19140]]
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−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10879]]
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−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
** '''15''' reactions found over '''19''' reactions in the full pathway
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
+
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
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** [http://www.genome.jp/dbget-bin/www_bget?R07887 R07887]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.uniprot.org/uniprot/P40117 P40117]
+
{{#set: ec number=EC-6.2.1}}
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** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
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{{#set: gene associated=Tiso_gene_14183|Tiso_gene_12275}}
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** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
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{{#set: in pathway=PWY-735}}
−
** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
+
{{#set: reconstruction source=orthology-esiliculosus}}
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** [http://www.uniprot.org/uniprot/P45455 P45455]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q43157 Q43157]
+
−
** [http://www.uniprot.org/uniprot/Q43843 Q43843]
+
−
** [http://www.uniprot.org/uniprot/P74061 P74061]
+
−
** [http://www.uniprot.org/uniprot/O23782 O23782]
+
−
** [http://www.uniprot.org/uniprot/P51012 P51012]
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−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ribulose-phosphate_-3_chloroplastic}}
+
−
{{#set: ec number=EC-5.1.3.1}}
+
−
{{#set: gene associated=Tiso_gene_4754|Tiso_gene_19140|Tiso_gene_10879}}
+
−
{{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P122-PWY|P185-PWY|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 17:02, 21 March 2018

Reaction RXN-10695

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoate[c] + 1 ATP[c] => 1 3-oxo-2-(cis-2'-pentenyl)-cyclopentane-1-octanoyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-735, jasmonic acid biosynthesis: PWY-735
    • 15 reactions found over 19 reactions in the full pathway

Reconstruction information

External links




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