Difference between revisions of "RXN66-353"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11520 CPD-11520] == * smiles: ** CCC=CCC4(C(=O)CCC(CCCCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-11520 CPD-11520] ==
−
* direction:
+
* smiles:
−
** REVERSIBLE
+
** CCC=CCC4(C(=O)CCC(CCCCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)
 
* common name:
 
* common name:
−
** spermidine_synthase
+
** OPC8-3-ketoacyl-CoA
−
* ec number:
+
* inchi key:
−
** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
+
** InChIKey=YYCCMACTOAJGGW-LHVXMLCWSA-J
 +
* molecular weight:
 +
** 1053.904   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[RXN-10699]]
−
** 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
+
== Reaction(s) known to produce the compound ==
−
* With common name(s):
+
* [[RXN-10698]]
−
** 1 putrescine[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''<=>''' 1 H+[c] '''+''' 1 spermidine[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
+
== Reaction(s) of unknown directionality ==
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_16718]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_17803]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_17081]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16717]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
== Pathways  ==
+
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PUBCHEM:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=44237200 44237200]
−
* LIGAND-RXN:
+
{{#set: smiles=CCC=CCC4(C(=O)CCC(CCCCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
+
{{#set: common name=OPC8-3-ketoacyl-CoA}}
−
* UNIPROT:
+
{{#set: inchi key=InChIKey=YYCCMACTOAJGGW-LHVXMLCWSA-J}}
−
** [http://www.uniprot.org/uniprot/P19623 P19623]
+
{{#set: molecular weight=1053.904    }}
−
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
+
{{#set: consumed by=RXN-10699}}
−
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
+
{{#set: produced by=RXN-10698}}
−
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
+
−
** [http://www.uniprot.org/uniprot/P09158 P09158]
+
−
** [http://www.uniprot.org/uniprot/O48660 O48660]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=spermidine_synthase}}
+
−
{{#set: ec number=EC-2.5.1.16}}
+
−
{{#set: gene associated=Tiso_gene_16718|Tiso_gene_17803|Tiso_gene_17081|Tiso_gene_16717}}
+
−
{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 17:02, 21 March 2018

Metabolite CPD-11520

  • smiles:
    • CCC=CCC4(C(=O)CCC(CCCCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)
  • common name:
    • OPC8-3-ketoacyl-CoA
  • inchi key:
    • InChIKey=YYCCMACTOAJGGW-LHVXMLCWSA-J
  • molecular weight:
    • 1053.904
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCC=CCC4(C(=O)CCC(CCCCCC(=O)CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)4)" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN66-353&oldid=38323"