Difference between revisions of "RXN-15288"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11246 RXN-11246] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11246 RXN-11246] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** d-3-phosphoglycerate_dehydrogenase
+
** thiolase
−
** ORF
+
** acetyl-_c-acetyltransferase
 +
** 3-ketoacyl-_thiolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c]
+
** 1 [[CPD-10600]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-201]][c] '''+''' 1 [[ACETYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 3-phospho-D-glycerate[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 3-phospho-hydroxypyruvate[c]
+
** 1 4-hydroxybenzoyl-acetyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 4-hydroxybenzoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15686]]
+
* Gene: [[Tiso_gene_15327]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_18904]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_3856]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_15687]]
+
* Gene: [[Tiso_gene_10116]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_3855]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_17123]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_17451]]
−
* [[Tiso_gene_6223]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
−
* [[Tiso_gene_6224]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
+
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
+
{{#set: common name=thiolase}}
−
* LIGAND-RXN:
+
{{#set: common name=acetyl-_c-acetyltransferase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
+
{{#set: common name=3-ketoacyl-_thiolase}}
−
* UNIPROT:
+
{{#set: ec number=EC-2.3.1.16}}
−
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
+
{{#set: gene associated=Tiso_gene_15327|Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_3855|Tiso_gene_17451}}
−
** [http://www.uniprot.org/uniprot/P43885 P43885]
+
{{#set: in pathway=PWY-6435}}
−
** [http://www.uniprot.org/uniprot/P35136 P35136]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P40510 P40510]
+
−
** [http://www.uniprot.org/uniprot/P40054 P40054]
+
−
** [http://www.uniprot.org/uniprot/O49485 O49485]
+
−
** [http://www.uniprot.org/uniprot/P87228 P87228]
+
−
** [http://www.uniprot.org/uniprot/O04130 O04130]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.1.1.95}}
+
−
{{#set: gene associated=Tiso_gene_15686|Tiso_gene_18904|Tiso_gene_15687|Tiso_gene_17123|Tiso_gene_6223|Tiso_gene_6224}}
+
−
{{#set: in pathway=SERSYN-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:03, 21 March 2018

Reaction RXN-11246

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thiolase
    • acetyl-_c-acetyltransferase
    • 3-ketoacyl-_thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 4-hydroxybenzoyl-acetyl-CoA[c] + 1 coenzyme A[c] => 1 4-hydroxybenzoyl-CoA[c] + 1 acetyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6435, 4-hydroxybenzoate biosynthesis V: PWY-6435
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15288&oldid=38455"