Difference between revisions of "Tiso gene 3363"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_17170 == * left end position: ** 2287 * transcription direction: ** NEGATIVE * right end position: ** 3627 * centisome position: ** 59.1108...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-480 RXN66-480] == * direction: ** LEFT-TO-RIGHT * common name: ** phytenoyl-CoA synthetase **...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_17170 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-480 RXN66-480] ==
−
* left end position:
+
* direction:
−
** 2287
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** phytenoyl-CoA synthetase
−
* right end position:
+
** polyketide_synthase
−
** 3627
+
** long_chain_acyl-_synthetase
−
* centisome position:
+
** ORF
−
** 59.110878   
+
** acyl-_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** FNR
 
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[1.18.1.2-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CPD-14927]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-14928]][c] '''+''' 1 [[AMP]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 phytenate[c] '''=>''' 1 diphosphate[c] '''+''' 1 phytenoyl-CoA[c] '''+''' 1 AMP[c]
−
***ec-number
+
 
−
* [[RXN-17897]]
+
== Genes associated with this reaction  ==
−
** in-silico_annotation
+
Genes have been associated with this reaction based on different elements listed below.
−
***ec-number
+
* Gene: [[Tiso_gene_348]]
−
** experimental_annotation
+
** Source: [[annotation-in-silico_annotation]]
−
***ec-number
+
*** Assignment: EC-NUMBER
−
== Pathways associated ==
+
** Source: [[annotation-experimental_annotation]]
−
* [[PWY-7230]]
+
*** Assignment: EC-NUMBER
−
* [[PWY-101]]
+
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7855]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4191]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[PWY66-389]], phytol degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-389 PWY66-389]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=2287}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=NEGATIVE}}
+
{{#set: common name=phytenoyl-CoA synthetase}}
−
{{#set: right end position=3627}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: centisome position=59.110878    }}
+
{{#set: common name=long_chain_acyl-_synthetase}}
−
{{#set: common name=FNR}}
+
{{#set: common name=ORF}}
−
{{#set: reaction associated=1.18.1.2-RXN|RXN-17897}}
+
{{#set: common name=acyl-_synthetase}}
−
{{#set: pathway associated=PWY-7230|PWY-101}}
+
{{#set: ec number=EC-6.2.1.3}}
 +
{{#set: gene associated=Tiso_gene_348|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_136|Tiso_gene_500|Tiso_gene_7855|Tiso_gene_4191|Tiso_gene_10876|Tiso_gene_9394}}
 +
{{#set: in pathway=PWY66-389}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:05, 21 March 2018

Reaction RXN66-480

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phytenoyl-CoA synthetase
    • polyketide_synthase
    • long_chain_acyl-_synthetase
    • ORF
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 phytenate[c] => 1 diphosphate[c] + 1 phytenoyl-CoA[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-389, phytol degradation: PWY66-389
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3363&oldid=38677"