Difference between revisions of "IDS2"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** amp_deamina...")
(Created page with "Category:Gene == Gene Tiso_gene_4437 == * right end position: ** 8671 * transcription direction: ** POSITIVE * left end position: ** 1933 * centisome position: ** 13.01070...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] ==
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== Gene Tiso_gene_4437 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8671
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* common name:
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* transcription direction:
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** amp_deaminase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.5.4.17 EC-3.5.4.17]
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** 1933
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** [http://enzyme.expasy.org/EC/3.5.4.6 EC-3.5.4.6]
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* centisome position:
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** 13.010701   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[IMP]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 H2O[c] '''=>''' 1 IMP[c] '''+''' 1 ammonium[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_1778]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12196]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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* Reaction: [[RXN0-5462]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8671}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14777 14777]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1933}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00181 R00181]
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{{#set: centisome position=13.010701    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P10759 P10759]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/Q02356 Q02356]
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** [http://www.uniprot.org/uniprot/P23109 P23109]
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** [http://www.uniprot.org/uniprot/P15274 P15274]
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** [http://www.uniprot.org/uniprot/Q7M3H8 Q7M3H8]
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** [http://www.uniprot.org/uniprot/Q01433 Q01433]
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** [http://www.uniprot.org/uniprot/Q01432 Q01432]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=amp_deaminase}}
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{{#set: ec number=EC-3.5.4.17}}
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{{#set: ec number=EC-3.5.4.6}}
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{{#set: gene associated=Tiso_gene_1778}}
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{{#set: in pathway=PWY-6596}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 17:06, 21 March 2018

Gene Tiso_gene_4437

  • right end position:
    • 8671
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1933
  • centisome position:
    • 13.010701
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=IDS2&oldid=38747"