Difference between revisions of "OrDC"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] == * direction: ** LEFT-TO-RIGHT * common name: ** chloroplast_beta-keto_acyl_...")
(Created page with "Category:Gene == Gene Tiso_gene_13527 == * right end position: ** 5391 * transcription direction: ** NEGATIVE * left end position: ** 3192 * centisome position: ** 51.1538...")
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[[Category:Reaction]]
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[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13443 RXN-13443] ==
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== Gene Tiso_gene_13527 ==
* direction:
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* right end position:
** LEFT-TO-RIGHT
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** 5391
* common name:
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* transcription direction:
** chloroplast_beta-keto_acyl_reductase
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** NEGATIVE
* ec number:
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* left end position:
** [http://enzyme.expasy.org/EC/1.1.1.330 EC-1.1.1.330]
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** 3192
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* centisome position:
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** 51.153843   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reactions associated ==
* With identifiers:
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* Reaction: [[ASPCARBTRANS-RXN]]
** 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[CPD-14423]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-14424]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
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** Source: [[annotation-in-silico_annotation]]
* With common name(s):
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*** Assignment: ec-number
** 1 NAD(P)H[c] '''+''' 1 3-oxo-docosapentaenoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 (5Z,8Z,11Z,14Z,17Z)-3R-hydroxy-docosapentaenoyl-CoA[c] '''+''' 1 NAD(P)+[c]
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** Source: [[annotation-experimental_annotation]]
 
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*** Assignment: ec-number
== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-synechocystis]]
* [[Tiso_gene_9871]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9885]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13083]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-7053]], docosahexaenoate biosynthesis I (lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7053 PWY-7053]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7606]], docosahexaenoate biosynthesis III (6-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7606 PWY-7606]
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** '''14''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-7727]], docosahexaenoate biosynthesis IV (4-desaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7727 PWY-7727]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
* Category: [[annotation]]
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** Source: [[orthology-creinhardtii]]
** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
*** Tool: [[pathwaytools]]
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* [[PWY-7790]]
** Source: [[annotation-in-silico_annotation]]
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* [[PWY-7791]]
*** Tool: [[pathwaytools]]
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* [[PWY-5686]]
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5391}}
{{#set: common name=chloroplast_beta-keto_acyl_reductase}}
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{{#set: transcription direction=NEGATIVE}}
{{#set: ec number=EC-1.1.1.330}}
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{{#set: left end position=3192}}
{{#set: gene associated=Tiso_gene_9871|Tiso_gene_9885|Tiso_gene_13083}}
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{{#set: centisome position=51.153843    }}
{{#set: in pathway=PWY-7053|PWY-7606|PWY-7727}}
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{{#set: reaction associated=ASPCARBTRANS-RXN}}
{{#set: reconstruction category=orthology|annotation}}
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{{#set: pathway associated=PWY-7790|PWY-7791|PWY-5686}}
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:06, 21 March 2018

Gene Tiso_gene_13527

  • right end position:
    • 5391
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3192
  • centisome position:
    • 51.153843
  • Synonym(s):

Reactions associated

Pathways associated

External links