Difference between revisions of "RETINOL-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] == * direction: ** L...")
(Created page with "Category:Gene == Gene Tiso_gene_7799 == * right end position: ** 10650 * transcription direction: ** NEGATIVE * left end position: ** 8299 * centisome position: ** 76.8283...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] ==
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== Gene Tiso_gene_7799 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 10650
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* common name:
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* transcription direction:
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** 3-hydroxyisobutyrate_mitochondrial
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** NEGATIVE
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** 3-hydroxyisobutyrate_dehydrogenase
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* left end position:
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** uncharacterized_oxidoreductase
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** 8299
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.1.1.31 EC-1.1.1.31]
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** 76.82837   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ALDEHYDE-REDUCTASE-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[CPD-12175]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CH3-MALONATE-S-ALD]][c] '''+''' 1 [[NADH]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 NAD+[c] '''+''' 1 (S)-3-hydroxy-isobutanoate[c] '''=>''' 1 H+[c] '''+''' 1 (S)-methylmalonate-semialdehyde[c] '''+''' 1 NADH[c]
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* Reaction: [[RXN-12078]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14102]]
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* [[Tiso_gene_19590]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-8772]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: automated-name-match
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* [[Tiso_gene_7107]]
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* Reaction: [[RXN-8773]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_19771]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19772]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5857]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_19592]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-5515]]
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* [[PWY-5516]]
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* [[PWY-6693]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=10650}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02047 R02047]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: left end position=8299}}
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** [http://www.uniprot.org/uniprot/P29266 P29266]
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{{#set: centisome position=76.82837    }}
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** [http://www.uniprot.org/uniprot/P28811 P28811]
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{{#set: reaction associated=ALDEHYDE-REDUCTASE-RXN|RXN-12078|RXN-14102|RXN-8772|RXN-8773}}
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** [http://www.uniprot.org/uniprot/Q8XAE4 Q8XAE4]
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{{#set: pathway associated=PWY-5515|PWY-5516|PWY-6693}}
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** [http://www.uniprot.org/uniprot/Q55702 Q55702]
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** [http://www.uniprot.org/uniprot/Q9XTI0 Q9XTI0]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=3-hydroxyisobutyrate_mitochondrial}}
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{{#set: common name=3-hydroxyisobutyrate_dehydrogenase}}
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{{#set: common name=uncharacterized_oxidoreductase}}
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{{#set: ec number=EC-1.1.1.31}}
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{{#set: gene associated=Tiso_gene_19590|Tiso_gene_7107|Tiso_gene_19771|Tiso_gene_19772|Tiso_gene_5857|Tiso_gene_19592}}
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{{#set: in pathway=VALDEG-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:06, 21 March 2018

Gene Tiso_gene_7799

  • right end position:
    • 10650
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 8299
  • centisome position:
    • 76.82837
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RETINOL-DEHYDROGENASE-RXN&oldid=38844"