Difference between revisions of "Tiso gene 6231"

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(Created page with "Category:Gene == Gene Tiso_gene_14474 == * left end position: ** 261 * transcription direction: ** POSITIVE * right end position: ** 1585 * centisome position: ** 4.636702...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_14474 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] ==
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* left end position:
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* direction:
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** 261
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** isoleucine--trna_cytoplasmic
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* right end position:
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** isoleucine--trna_ligase
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** 1585
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/6.1.1.5 EC-6.1.1.5]
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** 4.6367025   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATCY]]
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* With identifiers:
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** [[pantograph]]-[[creinhardtii]]
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** 1 [[ATP]][c] '''+''' 1 [[ILE-tRNAs]][c] '''+''' 1 [[ILE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* [[ATPASE-RXN]]
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* With common name(s):
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** in-silico_annotation
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** 1 ATP[c] '''+''' 1 a tRNAile[c] '''+''' 1 L-isoleucine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-isoleucyl-[tRNAile][c] '''+''' 1 AMP[c]
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***ec-number
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* [[AUPT]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[DATCY]]
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* Gene: [[Tiso_gene_12496]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[DATUP]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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* [[DCTCP]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* [[DCTUP]]
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* Gene: [[Tiso_gene_11779]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[DGTCY]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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* [[DGTUP]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* [[DTTGY]]
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== Pathways  ==
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** [[pantograph]]-[[creinhardtii]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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* [[DTTUP]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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** [[pantograph]]-[[creinhardtii]]
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== Reconstruction information  ==
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* [[DUTCP]]
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* Category: [[orthology]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* [[DUTUP]]
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*** Tool: [[pantograph]]
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** [[pantograph]]-[[creinhardtii]]
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* Category: [[annotation]]
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* [[GTCY]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Tool: [[pathwaytools]]
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* [[GTUP]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Tool: [[pathwaytools]]
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* [[ITCY]]
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** [[pantograph]]-[[creinhardtii]]
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* [[ITUP]]
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** [[pantograph]]-[[creinhardtii]]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** in-silico_annotation
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***ec-number
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* [[RXN-12195]]
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** in-silico_annotation
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***ec-number
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* [[RXN-12196]]
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** in-silico_annotation
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***ec-number
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* [[RXN0-5462]]
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** in-silico_annotation
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***ec-number
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* [[URIDINEKIN-RXN]]
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** in-silico_annotation
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***automated-name-match
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* [[URKI-RXN]]
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** in-silico_annotation
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***automated-name-match
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* [[UTCY]]
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** [[pantograph]]-[[creinhardtii]]
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−
* [[UTUP]]
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** [[pantograph]]-[[creinhardtii]]
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−
== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7193]]
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* [[PWY-7210]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=261}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11060 11060]
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{{#set: right end position=1585}}
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* LIGAND-RXN:
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{{#set: centisome position=4.6367025    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
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{{#set: reaction associated=ATCY|ATPASE-RXN|AUPT|DATCY|DATUP|DCTCP|DCTUP|DGTCY|DGTUP|DTTGY|DTTUP|DUTCP|DUTUP|GTCY|GTUP|ITCY|ITUP|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462|URIDINEKIN-RXN|URKI-RXN|UTCY|UTUP}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7193|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P18330 P18330]
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** [http://www.uniprot.org/uniprot/P36422 P36422]
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** [http://www.uniprot.org/uniprot/O29622 O29622]
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** [http://www.uniprot.org/uniprot/P47587 P47587]
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** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
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** [http://www.uniprot.org/uniprot/P46213 P46213]
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** [http://www.uniprot.org/uniprot/P41257 P41257]
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** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
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** [http://www.uniprot.org/uniprot/Q58357 Q58357]
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** [http://www.uniprot.org/uniprot/O83466 O83466]
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** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
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** [http://www.uniprot.org/uniprot/P56456 P56456]
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** [http://www.uniprot.org/uniprot/O58792 O58792]
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** [http://www.uniprot.org/uniprot/O84022 O84022]
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** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
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** [http://www.uniprot.org/uniprot/O66651 O66651]
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** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
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** [http://www.uniprot.org/uniprot/O27428 O27428]
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** [http://www.uniprot.org/uniprot/Q45477 Q45477]
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** [http://www.uniprot.org/uniprot/O51773 O51773]
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** [http://www.uniprot.org/uniprot/P46207 P46207]
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** [http://www.uniprot.org/uniprot/P41252 P41252]
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** [http://www.uniprot.org/uniprot/P41972 P41972]
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** [http://www.uniprot.org/uniprot/P48526 P48526]
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** [http://www.uniprot.org/uniprot/P75258 P75258]
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** [http://www.uniprot.org/uniprot/P73505 P73505]
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** [http://www.uniprot.org/uniprot/Q49024 Q49024]
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** [http://www.uniprot.org/uniprot/Q49074 Q49074]
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** [http://www.uniprot.org/uniprot/P43824 P43824]
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** [http://www.uniprot.org/uniprot/P09436 P09436]
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** [http://www.uniprot.org/uniprot/P00956 P00956]
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** [http://www.uniprot.org/uniprot/Q94425 Q94425]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=isoleucine--trna_cytoplasmic}}
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{{#set: common name=isoleucine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.5}}
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{{#set: gene associated=Tiso_gene_12496|Tiso_gene_11779}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 17:08, 21 March 2018

Reaction ISOLEUCINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • isoleucine--trna_cytoplasmic
    • isoleucine--trna_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAile[c] + 1 L-isoleucine[c] => 1 diphosphate[c] + 1 an L-isoleucyl-[tRNAile][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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