Difference between revisions of "Initiation-tRNAmet"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=STRICTOSIDINE-SYNTHASE-RXN STRICTOSIDINE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R07219 R07219] == * direction: ** LEFT-TO-RIGHT * common name: ** R655 * Synonym(s): == Reaction F...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=STRICTOSIDINE-SYNTHASE-RXN STRICTOSIDINE-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R07219 R07219] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** strictosidine_synthase
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** R655
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* ec number:
+
−
** [http://enzyme.expasy.org/EC/4.3.3.2 EC-4.3.3.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[TRYPTAMINE]][c] '''+''' 1 [[SECOLOGANIN-CPD]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[STRICTOSIDINE]][c]
+
** 1.0 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c] '''=>''' 1.0 [[CPD-4211]][c] '''+''' 1.0 [[WATER]][c] '''+''' 1.0 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 tryptamine[c] '''+''' 1 secologanin[c] '''=>''' 1 H2O[c] '''+''' 1 strictosidine[c]
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** 1.0 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''+''' 1.0 NADPH[c] '''+''' 1.0 H+[c] '''=>''' 1.0 dimethylallyl diphosphate[c] '''+''' 1.0 H2O[c] '''+''' 1.0 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8474]]
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* Gene: [[Tiso_gene_5609]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-synechocystis]]
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***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_8473]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5290]], secologanin and strictosidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5290 PWY-5290]
 
−
** '''1''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-6326]], camptothecin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6326 PWY-6326]
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15013 15013]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03738 R03738]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9VAQ9 Q9VAQ9]
 
−
** [http://www.uniprot.org/uniprot/P68175 P68175]
 
−
** [http://www.uniprot.org/uniprot/P18417 P18417]
 
−
** [http://www.uniprot.org/uniprot/P68174 P68174]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=strictosidine_synthase}}
+
{{#set: common name=R655}}
−
{{#set: ec number=EC-4.3.3.2}}
+
{{#set: gene associated=Tiso_gene_5609}}
−
{{#set: gene associated=Tiso_gene_8474|Tiso_gene_8473}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=PWY-5290|PWY-6326}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=orthology-synechocystis}}
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 17:08, 21 March 2018

Reaction R07219

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • R655
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] + 1.0 NADPH[c] + 1.0 H+[c] => 1.0 dimethylallyl diphosphate[c] + 1.0 H2O[c] + 1.0 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Initiation-tRNAmet&oldid=39103"