Difference between revisions of "AAL fum"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-ARABINOSE-4-EPIMERASE-RXN UDP-ARABINOSE-4-EPIMERASE-RXN] == * direction: ** REVERSIBLE * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPREDUCT-RXN GDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonucleoside-diph...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDP-ARABINOSE-4-EPIMERASE-RXN UDP-ARABINOSE-4-EPIMERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPREDUCT-RXN GDPREDUCT-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** udp-galactopyranose_mutase
+
** ribonucleoside-diphosphate_reductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.1.3.5 EC-5.1.3.5]
+
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-12513]][c] '''<=>''' 1 [[UDP-D-XYLOSE]][c]
+
** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DGDP]][c] '''+''' 1 [[Ox-Thioredoxin]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-&beta;-L-arabinopyranose[c] '''<=>''' 1 UDP-&alpha;-D-xylose[c]
+
** 1 a reduced thioredoxin[c] '''+''' 1 GDP[c] '''=>''' 1 H2O[c] '''+''' 1 dGDP[c] '''+''' 1 an oxidized thioredoxin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15395]]
+
* Gene: [[Tiso_gene_10138]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-synechocystis]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_10617]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9916]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9915]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-63]], UDP-L-arabinose biosynthesis I (from UDP-xylose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-63 PWY-63]
+
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7222 PWY-7222]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7226 PWY-7226]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11320 11320]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28030 28030]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01473 R01473]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02019 R02019]
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=udp-galactopyranose_mutase}}
+
{{#set: common name=ribonucleoside-diphosphate_reductase}}
−
{{#set: ec number=EC-5.1.3.5}}
+
{{#set: ec number=EC-1.17.4.1}}
−
{{#set: gene associated=Tiso_gene_15395}}
+
{{#set: gene associated=Tiso_gene_10138|Tiso_gene_10617|Tiso_gene_9916|Tiso_gene_9915}}
−
{{#set: in pathway=PWY-63}}
+
{{#set: in pathway=PWY-7222|PWY-7226}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:09, 21 March 2018

Reaction GDPREDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ribonucleoside-diphosphate_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a reduced thioredoxin[c] + 1 GDP[c] => 1 H2O[c] + 1 dGDP[c] + 1 an oxidized thioredoxin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7222, guanosine deoxyribonucleotides de novo biosynthesis II: PWY-7222
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7226, guanosine deoxyribonucleotides de novo biosynthesis I: PWY-7226
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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