Difference between revisions of "Orthology-athaliana"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] == * direction: ** REVERSIBLE * common name: ** aminotransferase ** aspartate_...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** pentafunctional_protein
+
** aminotransferase
 +
** aspartate_aminotransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''=>''' 1 [[SHIKIMATE]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PHE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-dehydroshikimate[c] '''=>''' 1 shikimate[c] '''+''' 1 NADP+[c]
+
** 1 2-oxoglutarate[c] '''+''' 1 L-phenylalanine[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 2-oxo-3-phenylpropanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5753]]
+
* Gene: [[Tiso_gene_12889]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_15680]]
−
* [[Tiso_gene_5752]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_13538]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17809]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_6815]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17718]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
+
* [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
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* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
+
{{#set: common name=aminotransferase}}
−
* LIGAND-RXN:
+
{{#set: common name=aspartate_aminotransferase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
+
{{#set: ec number=EC-2.6.1.1}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_12889|Tiso_gene_15680|Tiso_gene_13538|Tiso_gene_17809|Tiso_gene_6815|Tiso_gene_17718}}
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
{{#set: in pathway=PWY-6318}}
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
−
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
+
−
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
+
−
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
+
−
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
+
−
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
+
−
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
+
−
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
+
−
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
+
−
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
+
−
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
+
−
** [http://www.uniprot.org/uniprot/P15770 P15770]
+
−
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
+
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=pentafunctional_protein}}
+
−
{{#set: ec number=EC-1.1.1.25}}
+
−
{{#set: gene associated=Tiso_gene_5753|Tiso_gene_5752}}
+
−
{{#set: in pathway=PWY-6163}}
+
 
{{#set: reconstruction category=orthology|manual|annotation}}
 
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:09, 21 March 2018

Reaction RXN-10814

  • direction:
    • REVERSIBLE
  • common name:
    • aminotransferase
    • aspartate_aminotransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-oxoglutarate[c] + 1 L-phenylalanine[c] <=> 1 L-glutamate[c] + 1 2-oxo-3-phenylpropanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6318, L-phenylalanine degradation IV (mammalian, via side chain): PWY-6318
    • 4 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Orthology-athaliana&oldid=39208"