Difference between revisions of "Orthology"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTOLDEHYD-RXN HISTOLDEHYD-RXN] == * direction: ** REVERSIBLE * common name: ** histidinol_dehydro...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARSYN-RXN AICARSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTOLDEHYD-RXN HISTOLDEHYD-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARSYN-RXN AICARSYN-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
+
* ec number:
−
** histidinol_dehydrogenase
+
** [http://enzyme.expasy.org/EC/4.3.2.2 EC-4.3.2.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HISTIDINOL]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[HISTIDINAL]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''<=>''' 1 [[AICAR]][c] '''+''' 1 [[FUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 histidinol[c] '''+''' 1 NAD+[c] '''<=>''' 1 histidinal[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
+
** 1 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole[c] '''<=>''' 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c] '''+''' 1 fumarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_11386]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[synechocystis]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_7381]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
+
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7234 PWY-7234]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[manual]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[manual-primary_network]]
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33799 33799]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23920 23920]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03012 R03012]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04559 R04559]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P24226 P24226]
+
** [http://www.uniprot.org/uniprot/P21265 P21265]
−
** [http://www.uniprot.org/uniprot/P44001 P44001]
+
** [http://www.uniprot.org/uniprot/Q58339 Q58339]
−
** [http://www.uniprot.org/uniprot/O34651 O34651]
+
** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
−
** [http://www.uniprot.org/uniprot/P63950 P63950]
+
** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
−
** [http://www.uniprot.org/uniprot/Q9RSI4 Q9RSI4]
+
** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
−
** [http://www.uniprot.org/uniprot/Q02136 Q02136]
+
** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
−
** [http://www.uniprot.org/uniprot/Q9JTH9 Q9JTH9]
+
** [http://www.uniprot.org/uniprot/O65180 O65180]
−
** [http://www.uniprot.org/uniprot/O30027 O30027]
+
** [http://www.uniprot.org/uniprot/P12047 P12047]
−
** [http://www.uniprot.org/uniprot/Q9PM77 Q9PM77]
+
−
** [http://www.uniprot.org/uniprot/P10370 P10370]
+
−
** [http://www.uniprot.org/uniprot/P06988 P06988]
+
−
** [http://www.uniprot.org/uniprot/O66976 O66976]
+
−
** [http://www.uniprot.org/uniprot/Q58851 Q58851]
+
−
** [http://www.uniprot.org/uniprot/O26327 O26327]
+
−
** [http://www.uniprot.org/uniprot/Q9X0D1 Q9X0D1]
+
−
** [http://www.uniprot.org/uniprot/P18786 P18786]
+
−
** [http://www.uniprot.org/uniprot/P28736 P28736]
+
−
** [http://www.uniprot.org/uniprot/P45353 P45353]
+
−
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
+
−
** [http://www.uniprot.org/uniprot/P72946 P72946]
+
−
** [http://www.uniprot.org/uniprot/P73058 P73058]
+
−
** [http://www.uniprot.org/uniprot/P00815 P00815]
+
−
** [http://www.uniprot.org/uniprot/P07685 P07685]
+
−
** [http://www.uniprot.org/uniprot/P16245 P16245]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=histidinol_dehydrogenase}}
+
{{#set: ec number=EC-4.3.2.2}}
−
{{#set: gene associated=Tiso_gene_11386|Tiso_gene_7381}}
+
{{#set: in pathway=PWY-6123|PWY-6124|PWY-7234}}
−
{{#set: in pathway=HISTSYN-PWY}}
+
{{#set: reconstruction category=manual|annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:09, 21 March 2018

Reaction AICARSYN-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole[c] <=> 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c] + 1 fumarate[c]

Genes associated with this reaction

Pathways

  • PWY-6123, inosine-5'-phosphate biosynthesis I: PWY-6123
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6124, inosine-5'-phosphate biosynthesis II: PWY-6124
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7234, inosine-5'-phosphate biosynthesis III: PWY-7234
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Orthology&oldid=39213"