Difference between revisions of "Pantograph"

Revision as of 16:09, 21 March 2018

	Ec number	Reconstruction category	Reconstruction tool	Reconstruction source	Gene associated	In pathway
1.1.1.8-RXN	EC-1.1.1.8	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 13013 Tiso gene 15777 Tiso gene 6069 Tiso gene 2810 Tiso gene 2811 Tiso gene 3718	PWY-6118 PWY-7385 PWY-7411
1.4.3.19-RXN	EC-1.4.3.19	Orthology	Pantograph	Orthology-synechocystis	Tiso gene 16652 Tiso gene 13537 Tiso gene 11756	PWY-7396
1.8.4.8-RXN	EC-1.8.4.8	Orthology	Pantograph	Orthology-synechocystis Orthology-esiliculosus	Tiso gene 15770	SO4ASSIM-PWY
1TRANSKETO-RXN	EC-2.2.1.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Orthology-athaliana Annotation-experimental annotation Orthology-synechocystis	Tiso gene 5008 Tiso gene 11559	P124-PWY CALVIN-PWY P21-PWY PWY-5723 PWY-1861 P185-PWY NONOXIPENT-PWY
2-DEHYDROPANTOATE-REDUCT-RXN	EC-1.1.1.169	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 16426 Tiso gene 10174 Tiso gene 12761 Tiso gene 10173 Tiso gene 12762 Tiso gene 9392	PANTO-PWY PWY-6654
2-ISOPROPYLMALATESYN-RXN	EC-2.3.3.13	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 11453	LEUSYN-PWY PWY-6871
2.4.1.213-RXN	EC-2.4.1.213	Orthology	Pantograph	Orthology-synechocystis	Tiso gene 18196 Tiso gene 6869 Tiso gene 14220
2.5.1.32-RXN		Orthology	Pantograph	Orthology-synechocystis Orthology-esiliculosus	Tiso gene 15914	PWY-6287 PWY-6475
2.5.1.39-RXN	EC-2.5.1.39	Orthology	Pantograph	Orthology-synechocystis	Tiso gene 11582	PWY-5871 PWY-6978 PWY-5856
2.7.1.148-RXN	EC-2.7.1.148	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 13463	NONMEVIPP-PWY PWY-7560
2.7.7.13-RXN	EC-2.7.7.13	Orthology	Pantograph	Orthology-synechocystis	Tiso gene 14704	PWY-5659 PWY-882
2.7.7.60-RXN	EC-2.7.7.60	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 17568	NONMEVIPP-PWY PWY-7560
2PGADEHYDRAT-RXN	EC-4.2.1.11	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 5619 Tiso gene 13317 Tiso gene 14718 Tiso gene 8720	PWY-1042 P341-PWY PWY-2221 PWY-7124 PWY-1622 GLUCONEO-PWY GLYCOLYSIS NPGLUCAT-PWY ANAGLYCOLYSIS-PWY PWY-7218 PWY-6901 P124-PWY PWY-6886 PWY-5723 PWY-6142 P122-PWY PWY66-399 PWY-5484 PWY-7003
3-DEHYDROQUINATE-SYNTHASE-RXN	EC-4.2.3.4	Orthology Manual Annotation	Pantograph Pathwaytools	Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 5753 Tiso gene 3446 Tiso gene 3445 Tiso gene 3974 Tiso gene 5752 Tiso gene 3447	PWY-6164
3-ISOPROPYLMALDEHYDROG-RXN		Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-experimental annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 2920	LEUSYN-PWY PWY-6871
3-OXOACYL-ACP-SYNTH-BASE-RXN	EC-2.3.1.86 EC-2.3.1.85 EC-2.3.1.41	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 19302 Tiso gene 136 Tiso gene 14485 Tiso gene 13394 Tiso gene 5939 Tiso gene 135 Tiso gene 10876 Tiso gene 500 Tiso gene 15991	PWY-5965 PWY-5966 FASYN-INITIAL-PWY PWY-7388
3PGAREARR-RXN	EC-5.4.2.12	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 16271 Tiso gene 5468 Tiso gene 14530 Tiso gene 7201 Tiso gene 20311 Tiso gene 2365 Tiso gene 10516 Tiso gene 16754 Tiso gene 9922 Tiso gene 2667 Tiso gene 15391 Tiso gene 2841 Tiso gene 15048 Tiso gene 14212 Tiso gene 9923 Tiso gene 14664	PWY-1042 P341-PWY PWY-2221 GLUCONEO-PWY GLYCOLYSIS PWY-6901 PWY-7218 P124-PWY PWY-6886 PWY-5723 PWY-6142 PWY-5484 PWY-7124 PWY-7003
4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN	EC-1.13.11.27	Orthology Annotation	Pantograph Pathwaytools	Orthology-athaliana Annotation-in-silico annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 18328 Tiso gene 18976 Tiso gene 18977	PWY-1581 PWY-7432 TYRFUMCAT-PWY PWY-1422
4.2.1.59-RXN	EC-2.3.1.86 EC-2.3.1.85 EC-4.2.1.59	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-synechocystis	Tiso gene 500 Tiso gene 13394 Tiso gene 10876 Tiso gene 135 Tiso gene 6884 Tiso gene 6885 Tiso gene 136	PWY-5971 PWY-5994
4.3.1.17-RXN	EC-4.3.1.17	Orthology Manual	Pantograph	Manual-primary network Orthology-creinhardtii Orthology-synechocystis	Tiso gene 12535
5.3.1.23-RXN	EC-5.3.1.23	Orthology	Pantograph	Orthology-synechocystis	Tiso gene 18341 Tiso gene 3805	PWY-7174 PWY-4361
6PGLUCONDEHYDROG-RXN	EC-1.1.1.351	Orthology	Pantograph	Orthology-athaliana Orthology-creinhardtii Orthology-synechocystis Orthology-esiliculosus	Tiso gene 20238 Tiso gene 91 Tiso gene 7157	P122-PWY
ACETATE--COA-LIGASE-RXN	EC-6.2.1.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 3617 Tiso gene 1612 Tiso gene 3616	PWY66-161 PWY66-21 PWY66-162 PWY0-1313 PWY-6672 PWY-7118
ACETYL-COA-ACETYLTRANSFER-RXN	EC-2.3.1.9	Orthology	Pantograph	Orthology-athaliana Orthology-creinhardtii Orthology-synechocystis Orthology-esiliculosus	Tiso gene 17451 Tiso gene 15327 Tiso gene 16181	P162-PWY PWY-5177 PWY-6583 P163-PWY PWY-6883 PWY-5676 PWY-6588 PWY-7779 PWY-7778 PWY1-3 PWY-5789 PWY-6876 CENTFERM-PWY PWY-7391 PWY-5741 PWY-6174 ACETOACETATE-DEG-PWY PWY66-367 PWY-7216 PWY-922 PWY66-368 PWY-7401 PWY-6863 PWY-7524
ACETYLGLUTKIN-RXN	EC-2.7.2.8	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-athaliana Annotation-in-silico annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 13144	PWY-5154 GLUTORN-PWY ARGSYNBSUB-PWY
ACETYLORNTRANSAM-RXN	EC-2.6.1.11	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-creinhardtii Orthology-synechocystis Orthology-esiliculosus	Tiso gene 11231	PWY-5154 GLUTORN-PWY ARGSYNBSUB-PWY
ACONITATEDEHYDR-RXN		Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Annotation-experimental annotation Orthology-synechocystis	Tiso gene 13007	FERMENTATION-PWY PWY-5913 PWY66-398 PWY-5690 REDCITCYC PWY-5392 P23-PWY P105-PWY GLYOXYLATE-BYPASS PWY-6969 PWY-6728 PWY-6549 PWY-7254 PWY-7124 PWY-5750 TCA
ACP-S-ACETYLTRANSFER-RXN	EC-2.3.1.86 EC-2.3.1.85 EC-2.3.1.38	Orthology Manual Annotation	Pantograph Pathwaytools	Manual-primary network Orthology-athaliana Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 13394 Tiso gene 15991 Tiso gene 10876 Tiso gene 136 Tiso gene 500 Tiso gene 135	PWY-5966 FASYN-INITIAL-PWY
ACSERLY-RXN	EC-2.5.1.47	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 6110 Tiso gene 12184 Tiso gene 2283 Tiso gene 819 Tiso gene 17043 Tiso gene 7852	CYSTSYN-PWY
ADENOSYLHOMOCYSTEINASE-RXN	EC-3.3.1.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 14191	METHIONINE-DEG1-PWY PWY-5041
ADENYL-KIN-RXN	EC-2.7.4.3	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 694 Tiso gene 5837 Tiso gene 12257 Tiso gene 4816 Tiso gene 5839 Tiso gene 19036 Tiso gene 12256 Tiso gene 8576 Tiso gene 5387 Tiso gene 5081 Tiso gene 1453 Tiso gene 14116 Tiso gene 13477 Tiso gene 5388 Tiso gene 805 Tiso gene 3353 Tiso gene 19734	PWY-7219
ADENYLOSUCCINATE-SYNTHASE-RXN	EC-6.3.4.4	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 6453 Tiso gene 743	PWY-7219
ADENYLYLSULFKIN-RXN	EC-2.7.1.25	Orthology	Pantograph	Orthology-athaliana Orthology-creinhardtii Orthology-synechocystis	Tiso gene 17878 Tiso gene 9490 Tiso gene 17879 Tiso gene 16197 Tiso gene 1110	PWY-5340
ADPREDUCT-RXN	EC-1.17.4.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 10617 Tiso gene 9916 Tiso gene 10138 Tiso gene 9915	PWY-7220 PWY-7227
AIRS-RXN	EC-6.3.3.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Manual-primary network Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 1369	PWY-6121 PWY-6122 PWY-6277
ALCOHOL-DEHYDROG-RXN	EC-1.1.1.1	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 5424 Tiso gene 6563 Tiso gene 5425 Tiso gene 7649 Tiso gene 18459 Tiso gene 6562	PWY66-21 PWY4LZ-257 PWY-7118 PWY-6587 PWY-6333 PWY-5486 P161-PWY ETOH-ACETYLCOA-ANA-PWY P122-PWY PWY-5480 FERMENTATION-PWY
ARGSUCCINLYA-RXN	EC-4.3.2.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 2485	PWY-4984 ARGSYN-PWY PWY-5154 ARGSYNBSUB-PWY PWY-4983 PWY-7400
ARGSUCCINSYN-RXN	EC-6.3.4.5	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 12592	PWY-5154 ARGSYN-PWY PWY-4984 ARGSYNBSUB-PWY PWY-4983 PWY-7400
ASPAMINOTRANS-RXN	EC-2.6.1.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 17809 Tiso gene 6815 Tiso gene 17718 Tiso gene 13538 Tiso gene 12889 Tiso gene 15680	PWY-5913 MALATE-ASPARTATE-SHUTTLE-PWY PWY-7383 ASPARTATE-DEG1-PWY ASPARTATESYN-PWY PWY-7117 GLUTDEG-PWY PWY-7115 ASPARAGINE-DEG1-PWY-1
ASPARAGHYD-RXN	EC-3.5.1.38 EC-3.5.1.1	Orthology Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Orthology-creinhardtii Orthology-synechocystis Orthology-esiliculosus	Tiso gene 3570 Tiso gene 19398 Tiso gene 17477	ASPASN-PWY ASPARAGINE-DEG1-PWY ASPARAGINE-DEG1-PWY-1
ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN	EC-1.2.1.11	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 18603	HOMOSERSYN-PWY PWY-7153 DAPLYSINESYN-PWY PWY-2942 PWY-2941 PWY-6559 PWY-6562 PWY-5097 P101-PWY
ASPARTATEKIN-RXN	EC-2.7.2.4	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 16097 Tiso gene 4345 Tiso gene 13809 Tiso gene 17057	HOMOSERSYN-PWY PWY-7153 DAPLYSINESYN-PWY PWY-2942 PWY-2941 PWY-6559 PWY-6562 PWY-5097 P101-PWY
ASPCARBTRANS-RXN	EC-2.1.3.2	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 13527	PWY-7790 PWY-7791 PWY-5686
ASPDECARBOX-RXN	EC-4.1.1.11	Orthology	Pantograph	Orthology-synechocystis	Tiso gene 9927	PWY-5155
BRANCHED-CHAINAMINOTRANSFERILEU-RXN	EC-2.6.1.42	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network Orthology-creinhardtii	Tiso gene 14984 Tiso gene 17748 Tiso gene 18403	ILEUSYN-PWY ILEUDEG-PWY PWY-5108 PWY-5103 PWY-5101 PWY-5078 PWY-5104
BRANCHED-CHAINAMINOTRANSFERLEU-RXN	EC-2.6.1.6 EC-2.6.1.42	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-in-silico annotation Manual-primary network Annotation-experimental annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 18403 Tiso gene 14984	PWY-7767 LEU-DEG2-PWY LEUSYN-PWY PWY-5076
BRANCHED-CHAINAMINOTRANSFERVAL-RXN	EC-2.6.1.42	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Manual-primary network Annotation-in-silico annotation Orthology-synechocystis Orthology-esiliculosus	Tiso gene 18403 Tiso gene 14984	VALSYN-PWY VALDEG-PWY ALANINE-VALINESYN-PWY PWY-5057
CATAL-RXN	EC-1.11.1.6 EC-1.11.1.21	Orthology Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Annotation-in-silico annotation Orthology-synechocystis	Tiso gene 3006 Tiso gene 11916 Tiso gene 5435 Tiso gene 19683 Tiso gene 11607 Tiso gene 12499 Tiso gene 4990 Tiso gene 15923	PWY-5506 DETOX1-PWY DETOX1-PWY-1
CDPKIN-RXN	EC-2.7.4.6	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 16529 Tiso gene 17271 Tiso gene 17272 Tiso gene 195 Tiso gene 9290 Tiso gene 18224	PWY-7205
CDPREDUCT-RXN	EC-1.17.4.1	Orthology Manual Annotation	Pantograph Pathwaytools	Annotation-experimental annotation Orthology-esiliculosus Annotation-in-silico annotation Orthology-athaliana Orthology-synechocystis Manual-primary network	Tiso gene 10617 Tiso gene 9916 Tiso gene 10138 Tiso gene 9915	PWY-7210 PWY-7198 PWY-6545 PWY0-166 PWY-7184
... further results

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-{{#ask: [[Category:Reaction]] [[reconstruction source::orthology-athaliana]]
+{{#ask: [[Category:Reaction]] [[reconstruction source::orthology-synechocystis]]
 | ?COMMON NAME
 | ?ec number

Difference between revisions of "Pantograph"

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