Difference between revisions of "RXN-171"

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(Created page with "Category:Gene == Gene Tiso_gene_5753 == * right end position: ** 5351 * transcription direction: ** NEGATIVE * left end position: ** 81 * centisome position: ** 0.6241812...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-171 RXN-171] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1.14...")
 
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[[Category:Gene]]
+
[[Category:Reaction]]
== Gene Tiso_gene_5753 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-171 RXN-171] ==
* right end position:
+
* direction:
** 5351
+
** LEFT-TO-RIGHT
* transcription direction:
+
* ec number:
** NEGATIVE
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** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
* left end position:
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** 81
+
* centisome position:
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** 0.6241812   
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* Reaction: [[2.5.1.19-RXN]]
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* With identifiers:
** Source: [[annotation-in-silico_annotation]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-134]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CPD-482]][c]
*** Assignment: ec-number
+
* With common name(s):
 +
** 1 oxygen[c] '''+''' 1 gibberellin A9[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 gibberellin A51[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_3330]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
** Source: [[orthology-creinhardtii]]
 
* Reaction: [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: ec-number
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
* Reaction: [[3-DEHYDROQUINATE-SYNTHASE-RXN]]
+
== Pathways  ==
** Source: [[annotation-in-silico_annotation]]
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* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102]
*** Assignment: ec-number
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** '''4''' reactions found over '''11''' reactions in the full pathway
* Reaction: [[RXN-7967]]
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== Reconstruction information  ==
** Source: [[annotation-in-silico_annotation]]
+
* Category: [[orthology]]
*** Assignment: ec-number
+
** Source: [[orthology-athaliana]]
** Source: [[orthology-esiliculosus]]
+
*** Tool: [[pantograph]]
* Reaction: [[RXN-7968]]
+
** Source: [[annotation-in-silico_annotation]]
+
*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[SHIKIMATE-5-DEHYDROGENASE-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
+
*** Assignment: ec-number
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
== Pathways associated ==
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*** Tool: [[pantograph]]
* [[PWY-6164]]
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* [[PWY-6707]]
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* [[PWY-6416]]
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* [[QUINATEDEG-PWY]]
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* [[PWY-6163]]
+
 
== External links  ==
 
== External links  ==
{{#set: right end position=5351}}
+
* LIGAND-RXN:
{{#set: transcription direction=NEGATIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06337 R06337]
{{#set: left end position=81}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: centisome position=0.6241812    }}
+
{{#set: ec number=EC-1.14.11}}
{{#set: reaction associated=2.5.1.19-RXN|3-DEHYDROQUINATE-DEHYDRATASE-RXN|3-DEHYDROQUINATE-SYNTHASE-RXN|RXN-7967|RXN-7968|SHIKIMATE-5-DEHYDROGENASE-RXN}}
+
{{#set: gene associated=Tiso_gene_3330}}
{{#set: pathway associated=PWY-6164|PWY-6707|PWY-6416|QUINATEDEG-PWY|PWY-6163}}
+
{{#set: in pathway=PWY-102}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:05, 21 March 2018

Reaction RXN-171

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-102, gibberellin inactivation I (2β-hydroxylation): PWY-102
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links