Difference between revisions of "Tiso gene 12478"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dna_ligas...")
(Created page with "Category:Gene == Gene Tiso_gene_12478 == * right end position: ** 4606 * transcription direction: ** NEGATIVE * left end position: ** 1033 * centisome position: ** 14.8440...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] ==
+
== Gene Tiso_gene_12478 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 4606
−
* common name:
+
* transcription direction:
−
** dna_ligase
+
** NEGATIVE
−
** dna_ligase_mrna_capping_enzyme
+
* left end position:
−
** ORF
+
** 1033
−
* ec number:
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7]
+
** 14.844087   
−
** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1]
+
−
** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[LYSOPHOSPHOLIPASE-RXN]]
−
** 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''=>''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
−
* With common name(s):
+
−
** 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 ATP[c] '''+''' 1 a 5'-phospho-[DNA][c] '''=>''' 1 DNAn[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_11251]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_3498]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_14250]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-esiliculosus]]
+
−
* Gene: [[Tiso_gene_6743]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_14249]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_12142]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: ec-number
−
== Pathways  ==
+
* Reaction: [[RXN-15035]]
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-7409]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=4606}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
+
{{#set: transcription direction=NEGATIVE}}
−
* UNIPROT:
+
{{#set: left end position=1033}}
−
** [http://www.uniprot.org/uniprot/P12000 P12000]
+
{{#set: centisome position=14.844087    }}
−
** [http://www.uniprot.org/uniprot/P18858 P18858]
+
{{#set: reaction associated=LYSOPHOSPHOLIPASE-RXN|RXN-15035}}
−
** [http://www.uniprot.org/uniprot/P35970 P35970]
+
{{#set: pathway associated=PWY-7409}}
−
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
+
−
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
+
−
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
+
−
** [http://www.uniprot.org/uniprot/P49917 P49917]
+
−
** [http://www.uniprot.org/uniprot/P49916 P49916]
+
−
** [http://www.uniprot.org/uniprot/P37913 P37913]
+
−
** [http://www.uniprot.org/uniprot/P51892 P51892]
+
−
** [http://www.uniprot.org/uniprot/P16272 P16272]
+
−
** [http://www.uniprot.org/uniprot/P33798 P33798]
+
−
** [http://www.uniprot.org/uniprot/P00970 P00970]
+
−
** [http://www.uniprot.org/uniprot/P00969 P00969]
+
−
** [http://www.uniprot.org/uniprot/P04819 P04819]
+
−
** [http://www.uniprot.org/uniprot/P19088 P19088]
+
−
** [http://www.uniprot.org/uniprot/P07717 P07717]
+
−
** [http://www.uniprot.org/uniprot/P26813 P26813]
+
−
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
+
−
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
+
−
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
+
−
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
+
−
** [http://www.uniprot.org/uniprot/P20492 P20492]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=dna_ligase}}
+
−
{{#set: common name=dna_ligase_mrna_capping_enzyme}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-6.5.1.7}}
+
−
{{#set: ec number=EC-6.5.1.1}}
+
−
{{#set: ec number=EC-6.5.1.6}}
+
−
{{#set: gene associated=Tiso_gene_11251|Tiso_gene_3498|Tiso_gene_14250|Tiso_gene_6743|Tiso_gene_14249|Tiso_gene_12142}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:06, 21 March 2018

Gene Tiso_gene_12478

  • right end position:
    • 4606
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1033
  • centisome position:
    • 14.844087
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12478&oldid=39511"