Difference between revisions of "DNA-LIGASE-ATP-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_12478 == * right end position: ** 4606 * transcription direction: ** NEGATIVE * left end position: ** 1033 * centisome position: ** 14.8440...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dna_ligas...")
 
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_12478 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-LIGASE-ATP-RXN DNA-LIGASE-ATP-RXN] ==
−
* right end position:
+
* direction:
−
** 4606
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** dna_ligase
−
* left end position:
+
** dna_ligase_mrna_capping_enzyme
−
** 1033
+
** ORF
−
* centisome position:
+
* ec number:
−
** 14.844087   
+
** [http://enzyme.expasy.org/EC/6.5.1.7 EC-6.5.1.7]
 +
** [http://enzyme.expasy.org/EC/6.5.1.1 EC-6.5.1.1]
 +
** [http://enzyme.expasy.org/EC/6.5.1.6 EC-6.5.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* Reaction: [[LYSOPHOSPHOLIPASE-RXN]]
+
* With identifiers:
 +
** 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''=>''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 +
* With common name(s):
 +
** 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 ATP[c] '''+''' 1 a 5'-phospho-[DNA][c] '''=>''' 1 DNAn[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_11251]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3498]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14250]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6743]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14249]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12142]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
* Reaction: [[RXN-15035]]
+
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Tool: [[pathwaytools]]
−
== Pathways associated ==
+
−
* [[PWY-7409]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=4606}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
−
{{#set: left end position=1033}}
+
* UNIPROT:
−
{{#set: centisome position=14.844087    }}
+
** [http://www.uniprot.org/uniprot/P12000 P12000]
−
{{#set: reaction associated=LYSOPHOSPHOLIPASE-RXN|RXN-15035}}
+
** [http://www.uniprot.org/uniprot/P18858 P18858]
−
{{#set: pathway associated=PWY-7409}}
+
** [http://www.uniprot.org/uniprot/P35970 P35970]
 +
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
 +
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
 +
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
 +
** [http://www.uniprot.org/uniprot/P49917 P49917]
 +
** [http://www.uniprot.org/uniprot/P49916 P49916]
 +
** [http://www.uniprot.org/uniprot/P37913 P37913]
 +
** [http://www.uniprot.org/uniprot/P51892 P51892]
 +
** [http://www.uniprot.org/uniprot/P16272 P16272]
 +
** [http://www.uniprot.org/uniprot/P33798 P33798]
 +
** [http://www.uniprot.org/uniprot/P00970 P00970]
 +
** [http://www.uniprot.org/uniprot/P00969 P00969]
 +
** [http://www.uniprot.org/uniprot/P04819 P04819]
 +
** [http://www.uniprot.org/uniprot/P19088 P19088]
 +
** [http://www.uniprot.org/uniprot/P07717 P07717]
 +
** [http://www.uniprot.org/uniprot/P26813 P26813]
 +
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 +
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 +
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 +
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 +
** [http://www.uniprot.org/uniprot/P20492 P20492]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=dna_ligase}}
 +
{{#set: common name=dna_ligase_mrna_capping_enzyme}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.5.1.7}}
 +
{{#set: ec number=EC-6.5.1.1}}
 +
{{#set: ec number=EC-6.5.1.6}}
 +
{{#set: gene associated=Tiso_gene_11251|Tiso_gene_3498|Tiso_gene_14250|Tiso_gene_6743|Tiso_gene_14249|Tiso_gene_12142}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:06, 21 March 2018

Reaction DNA-LIGASE-ATP-RXN

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DNA-LIGASE-ATP-RXN&oldid=39515"