Difference between revisions of "PYRROLINECARBREDUCT-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_348 == * right end position: ** 34578 * transcription direction: ** POSITIVE * left end position: ** 30916 * centisome position: ** 87.8994...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRROLINECARBREDUCT-RXN PYRROLINECARBREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_348 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRROLINECARBREDUCT-RXN PYRROLINECARBREDUCT-RXN] ==
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* right end position:
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* direction:
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** 34578
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** pyrroline-5-carboxylate_reductase
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* left end position:
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** ORF
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** 30916
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** ankyrin_repeat-containing_protein
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* centisome position:
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* ec number:
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** 87.89947   
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** [http://enzyme.expasy.org/EC/1.5.1.2 EC-1.5.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[ACYLCOASYN-RXN]]
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* With identifiers:
 +
** 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[PRO]][c] '''+''' 1 [[NAD-P-OR-NOP]][c]
 +
* With common name(s):
 +
** 1 (S)-1-pyrroline-5-carboxylate[c] '''+''' 1 NAD(P)H[c] '''+''' 2 H+[c] '''=>''' 1 L-proline[c] '''+''' 1 NAD(P)+[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_8625]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: ec-number
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*** Assignment: EC-NUMBER
−
* Reaction: [[LINOLENOYL-RXN]]
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** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_20218]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
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*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_19254]]
−
*** Assignment: ec-number
+
−
* Reaction: [[R223-RXN]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_17059]]
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-12184]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Assignment: EC-NUMBER
−
** Source: [[annotation-experimental_annotation]]
+
== Pathways  ==
−
*** Assignment: ec-number
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* [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY]
−
* Reaction: [[RXN-12978]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** Source: [[annotation-in-silico_annotation]]
+
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
−
*** Assignment: ec-number
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** Source: [[annotation-experimental_annotation]]
+
* [[PWY-6344]], L-ornithine degradation II (Stickland reaction): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6344 PWY-6344]
−
*** Assignment: ec-number
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* Reaction: [[RXN-13290]]
+
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
−
** Source: [[annotation-in-silico_annotation]]
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
*** Assignment: ec-number
+
* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
−
** Source: [[annotation-experimental_annotation]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
*** Assignment: ec-number
+
== Reconstruction information  ==
−
* Reaction: [[RXN-13614]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** Assignment: ec-number
+
*** Tool: [[pantograph]]
−
** Source: [[annotation-experimental_annotation]]
+
* Category: [[manual]]
−
*** Assignment: ec-number
+
** Source: [[manual-primary_network]]
−
* Reaction: [[RXN-16380]]
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* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-16389]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-16393]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-16401]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: ec-number
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−
* Reaction: [[RXN-16402]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-16415]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-16418]]
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−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-7904]]
+
−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN-9623]]
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−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[orthology-athaliana]]
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−
* Reaction: [[RXN-9644]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: ec-number
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−
* Reaction: [[RXN-9673]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: ec-number
+
−
* Reaction: [[RXN0-7238]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
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−
* Reaction: [[RXN0-7239]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
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−
* Reaction: [[RXN0-7248]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
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−
* Reaction: [[RXN66-469]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
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−
* Reaction: [[RXN66-477]]
+
−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: ec-number
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−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
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−
* Reaction: [[RXN66-480]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
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−
* Reaction: [[RXN66-483]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[RXN66-484]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: ec-number
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: ec-number
+
−
* Reaction: [[TRANS-RXN0-623]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: ec-number
+
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Assignment: ec-number
+
*** Tool: [[pathwaytools]]
−
== Pathways associated ==
+
−
* [[PWY-6920]]
+
−
* [[P221-PWY]]
+
−
* [[PWY-321]]
+
−
* [[PWY-5972]]
+
−
* [[PWY-5971]]
+
−
* [[PWY-7033]]
+
−
* [[PWY-5136]]
+
−
* [[PWY66-389]]
+
−
* [[PWY-7288]]
+
−
* [[PWY-6733]]
+
−
* [[PWY-7094]]
+
−
* [[PWY66-391]]
+
−
* [[FAO-PWY]]
+
−
* [[PWY-1121]]
+
−
* [[PWY-6873]]
+
−
* [[PWY-5147]]
+
−
* [[PWY-5143]]
+
−
* [[PWY-5885]]
+
−
* [[PWY-7724]]
+
−
* [[PWY-6001]]
+
−
* [[PWY-6000]]
+
−
* [[PWY-7049]]
+
−
* [[PWY66-387]]
+
−
* [[PWY-5989]]
+
−
* [[PWY-6803]]
+
−
* [[PWY66-388]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: right end position=34578}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01248 R01248]
−
{{#set: left end position=30916}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01251 R01251]
−
{{#set: centisome position=87.89947    }}
+
* UNIPROT:
−
{{#set: reaction associated=ACYLCOASYN-RXN|LINOLENOYL-RXN|R223-RXN|RXN-12184|RXN-12978|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-7904|RXN-9623|RXN-9644|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
+
** [http://www.uniprot.org/uniprot/P32322 P32322]
−
{{#set: pathway associated=PWY-6920|P221-PWY|PWY-321|PWY-5972|PWY-5971|PWY-7033|PWY-5136|PWY66-389|PWY-7288|PWY-6733|PWY-7094|PWY66-391|FAO-PWY|PWY-1121|PWY-6873|PWY-5147|PWY-5143|PWY-5885|PWY-7724|PWY-6001|PWY-6000|PWY-7049|PWY66-387|PWY-5989|PWY-6803|PWY66-388}}
+
** [http://www.uniprot.org/uniprot/P27771 P27771]
 +
** [http://www.uniprot.org/uniprot/Q9CEF7 Q9CEF7]
 +
** [http://www.uniprot.org/uniprot/P14383 P14383]
 +
** [http://www.uniprot.org/uniprot/Q9PNL8 Q9PNL8]
 +
** [http://www.uniprot.org/uniprot/Q9JWW2 Q9JWW2]
 +
** [http://www.uniprot.org/uniprot/Q12740 Q12740]
 +
** [http://www.uniprot.org/uniprot/P22008 P22008]
 +
** [http://www.uniprot.org/uniprot/P54904 P54904]
 +
** [http://www.uniprot.org/uniprot/P0A9L8 P0A9L8]
 +
** [http://www.uniprot.org/uniprot/P17817 P17817]
 +
** [http://www.uniprot.org/uniprot/P32263 P32263]
 +
** [http://www.uniprot.org/uniprot/Q12641 Q12641]
 +
** [http://www.uniprot.org/uniprot/P46725 P46725]
 +
** [http://www.uniprot.org/uniprot/P74572 P74572]
 +
** [http://www.uniprot.org/uniprot/Q04708 Q04708]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=pyrroline-5-carboxylate_reductase}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=ankyrin_repeat-containing_protein}}
 +
{{#set: ec number=EC-1.5.1.2}}
 +
{{#set: gene associated=Tiso_gene_8625|Tiso_gene_20218|Tiso_gene_19254|Tiso_gene_17059}}
 +
{{#set: in pathway=PROSYN-PWY|ARG-PRO-PWY|PWY-6344|PWY-4981|PWY-3341}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:06, 21 March 2018

Reaction PYRROLINECARBREDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyrroline-5-carboxylate_reductase
    • ORF
    • ankyrin_repeat-containing_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PROSYN-PWY, L-proline biosynthesis I: PROSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway): ARG-PRO-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6344, L-ornithine degradation II (Stickland reaction): PWY-6344
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-3341, L-proline biosynthesis III: PWY-3341
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PYRROLINECARBREDUCT-RXN&oldid=39519"