Difference between revisions of "TRNA-CHARGING-PWY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6907 PWY-6907] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
 
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[[Category:Pathway]]
 
[[Category:Pathway]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6907 PWY-6907] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] ==
 
* taxonomic range:
 
* taxonomic range:
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
−
** thiamine diphosphate biosynthesis III (Staphylococcus)
+
** tRNA charging
 
* Synonym(s):
 
* Synonym(s):
−
** vitamin B1 biosynthesis III
 
−
** thiamin diphosphate biosynthesis III (Staphylococcus)
 
  
 
== Reaction(s) found ==
 
== Reaction(s) found ==
−
  '''3''' reactions found over '''3''' reactions in the full pathway
+
  '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[RXN-12610]]
+
* [[ALANINE--TRNA-LIGASE-RXN]]
−
** 3 associated gene(s):
+
** 5 associated gene(s):
−
*** [[Tiso_gene_2159]]
+
*** [[Tiso_gene_2298]]
−
*** [[Tiso_gene_10320]]
+
*** [[Tiso_gene_3249]]
−
*** [[Tiso_gene_2160]]
+
*** [[Tiso_gene_18607]]
−
** 1 reconstruction source(s) associated:
+
*** [[Tiso_gene_18609]]
 +
*** [[Tiso_gene_19573]]
 +
** 3 reconstruction source(s) associated:
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
−
* [[RXNQT-4191]]
+
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[ARGININE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_12997]]
 +
*** [[Tiso_gene_16360]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[ASPARAGINE--TRNA-LIGASE-RXN]]
 
** 5 associated gene(s):
 
** 5 associated gene(s):
−
*** [[Tiso_gene_4497]]
+
*** [[Tiso_gene_9304]]
−
*** [[Tiso_gene_15256]]
+
*** [[Tiso_gene_9908]]
−
*** [[Tiso_gene_17625]]
+
*** [[Tiso_gene_13908]]
−
*** [[Tiso_gene_11838]]
+
*** [[Tiso_gene_6065]]
−
*** [[Tiso_gene_17610]]
+
*** [[Tiso_gene_9303]]
−
** 1 reconstruction source(s) associated:
+
** 2 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[ASPARTATE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_13081]]
 +
*** [[Tiso_gene_17185]]
 +
*** [[Tiso_gene_7126]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
−
* [[THIAMIN-PYROPHOSPHOKINASE-RXN]]
+
* [[CYSTEINE--TRNA-LIGASE-RXN]]
−
** 1 associated gene(s):
+
** 2 associated gene(s):
−
*** [[Tiso_gene_16512]]
+
*** [[Tiso_gene_10881]]
 +
*** [[Tiso_gene_17657]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[GLURS-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_5379]]
 +
*** [[Tiso_gene_5046]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[GLUTAMINE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_5915]]
 +
*** [[Tiso_gene_11124]]
 +
*** [[Tiso_gene_7596]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[GLYCINE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_3788]]
 +
*** [[Tiso_gene_14742]]
 +
*** [[Tiso_gene_14743]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[HISTIDINE--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_12634]]
 +
*** [[Tiso_gene_8798]]
 +
*** [[Tiso_gene_13414]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_12496]]
 +
*** [[Tiso_gene_11779]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[LEUCINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_11524]]
 +
*** [[Tiso_gene_15439]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[LYSINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_6705]]
 +
*** [[Tiso_gene_16635]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[METHIONINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_284]]
 +
*** [[Tiso_gene_406]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_16467]]
 +
*** [[Tiso_gene_16650]]
 +
*** [[Tiso_gene_1625]]
 +
*** [[Tiso_gene_4232]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[PROLINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_11974]]
 +
*** [[Tiso_gene_14791]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXN-16165]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_284]]
 +
*** [[Tiso_gene_406]]
 
** 2 reconstruction source(s) associated:
 
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[SERINE--TRNA-LIGASE-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_1682]]
 +
*** [[Tiso_gene_10015]]
 +
*** [[Tiso_gene_587]]
 +
*** [[Tiso_gene_1684]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[THREONINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_13142]]
 +
*** [[Tiso_gene_4406]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_14318]]
 +
*** [[Tiso_gene_12988]]
 +
*** [[Tiso_gene_14319]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[TYROSINE--TRNA-LIGASE-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_10378]]
 +
*** [[Tiso_gene_4174]]
 +
*** [[Tiso_gene_12171]]
 +
*** [[Tiso_gene_4175]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[VALINE--TRNA-LIGASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_1372]]
 +
*** [[Tiso_gene_8041]]
 +
** 3 reconstruction source(s) associated:
 
*** [[annotation-in-silico_annotation]]
 
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 
*** [[orthology-esiliculosus]]
 
*** [[orthology-esiliculosus]]
 
== Reaction(s) not found ==
 
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
 +
* ECOCYC:
 +
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
{{#set: taxonomic range=TAX-2759}}
 
{{#set: taxonomic range=TAX-2}}
 
{{#set: taxonomic range=TAX-2}}
−
{{#set: common name=thiamine diphosphate biosynthesis III (Staphylococcus)}}
+
{{#set: taxonomic range=TAX-2157}}
−
{{#set: common name=vitamin B1 biosynthesis III|thiamin diphosphate biosynthesis III (Staphylococcus)}}
+
{{#set: common name=tRNA charging}}
−
{{#set: reaction found=3}}
+
{{#set: reaction found=21}}
−
{{#set: total reaction=3}}
+
{{#set: total reaction=21}}
 
{{#set: completion rate=100.0}}
 
{{#set: completion rate=100.0}}

Latest revision as of 19:06, 21 March 2018

Pathway TRNA-CHARGING-PWY

Reaction(s) found

21 reactions found over 21 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRNA-CHARGING-PWY&oldid=39521"