Difference between revisions of "Tiso gene 20218"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Naringenin chalcone iso...")
(Created page with "Category:Gene == Gene Tiso_gene_20218 == * right end position: ** 1571 * transcription direction: ** NEGATIVE * left end position: ** 66 * centisome position: ** 4.0268455...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
+
== Gene Tiso_gene_20218 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 1571
−
* common name:
+
* transcription direction:
−
** Naringenin chalcone isomerase
+
** NEGATIVE
−
** atp-dependent_rna_helicase_dhx30-like
+
* left end position:
−
* ec number:
+
** 66
−
** [http://enzyme.expasy.org/EC/5.5.1.6 EC-5.5.1.6]
+
* centisome position:
 +
** 4.0268455   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[PYRROLINECARBREDUCT-RXN]]
−
** 1 [[APIGENIN]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
+
−
* With common name(s):
+
−
** 1 2',4,4',6'-tetrahydroxychalcone[c] '''=>''' 1 (2S)-naringenin[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Tiso_gene_13414]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: automated-name-match
−
* Gene: [[Tiso_gene_9838]]
+
* Reaction: [[RXN66-546]]
−
** Source: [[orthology-esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
+
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PROSYN-PWY]]
 +
* [[ARG-PRO-PWY]]
 +
* [[PWY-6344]]
 +
* [[PWY-4981]]
 +
* [[PWY-3341]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=1571}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
+
{{#set: transcription direction=NEGATIVE}}
−
* UNIPROT:
+
{{#set: left end position=66}}
−
** [http://www.uniprot.org/uniprot/P11650 P11650]
+
{{#set: centisome position=4.0268455    }}
−
** [http://www.uniprot.org/uniprot/P11651 P11651]
+
{{#set: reaction associated=PYRROLINECARBREDUCT-RXN|RXN66-546}}
−
** [http://www.uniprot.org/uniprot/P41088 P41088]
+
{{#set: pathway associated=PROSYN-PWY|ARG-PRO-PWY|PWY-6344|PWY-4981|PWY-3341}}
−
** [http://www.uniprot.org/uniprot/P14298 P14298]
+
−
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
+
−
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
+
−
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
+
−
** [http://www.uniprot.org/uniprot/P28012 P28012]
+
−
** [http://www.uniprot.org/uniprot/P41089 P41089]
+
−
** [http://www.uniprot.org/uniprot/O81980 O81980]
+
−
** [http://www.uniprot.org/uniprot/O22604 O22604]
+
−
** [http://www.uniprot.org/uniprot/O22651 O22651]
+
−
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Naringenin chalcone isomerase}}
+
−
{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
+
−
{{#set: ec number=EC-5.5.1.6}}
+
−
{{#set: gene associated=Tiso_gene_13414|Tiso_gene_9838}}
+
−
{{#set: in pathway=PWY-7397|PWY1F-FLAVSYN|PWY-6787}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:07, 21 March 2018

Gene Tiso_gene_20218

  • right end position:
    • 1571
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 66
  • centisome position:
    • 4.0268455
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_20218&oldid=39616"