Difference between revisions of "RXN-13374"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] == * direction: ** LEFT-TO-RIGHT * common name: ** 9-cis-epoxycarotenoid_dioxy...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** (3S)-linalool biosynthesis
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** 9-cis-epoxycarotenoid_dioxygenase
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** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
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** beta-carotene
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.63 EC-1.13.11.63]
 
* Synonym(s):
 
* Synonym(s):
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** (S)-linalool biosynthesis
 
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** S-(+)-linalool biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[GPPSYN-RXN]]
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** 1 [[CPD1F-129]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 2 [[RETINAL]][c]
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** 9 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_19542]]
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** 1 all-trans-β-carotene[c] '''+''' 1 oxygen[c] '''=>''' 2 all-trans-retinal[c]
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*** [[Tiso_gene_18201]]
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*** [[Tiso_gene_16284]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_2848]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_1035]]
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* Gene: [[Tiso_gene_13078]]
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*** [[Tiso_gene_4719]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_11582]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_13582]]
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* Gene: [[Tiso_gene_4653]]
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*** [[Tiso_gene_10317]]
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** Source: [[annotation-in-silico_annotation]]
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** 5 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_7740]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13079]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=4.2.3.25-RXN 4.2.3.25-RXN]
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== Pathways  ==
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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* RHEA:
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{{#set: common name=(3S)-linalool biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32888 32888]
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{{#set: common name=(S)-linalool biosynthesis|S-(+)-linalool biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00032 R00032]
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{{#set: total reaction=2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=50.0}}
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{{#set: common name=9-cis-epoxycarotenoid_dioxygenase}}
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{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
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{{#set: common name=beta-carotene}}
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{{#set: ec number=EC-1.13.11.63}}
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{{#set: gene associated=Tiso_gene_13078|Tiso_gene_4653|Tiso_gene_7740|Tiso_gene_13079}}
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{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:07, 21 March 2018

Reaction RXN-13374

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 9-cis-epoxycarotenoid_dioxygenase
    • 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
    • beta-carotene
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-β-carotene[c] + 1 oxygen[c] => 2 all-trans-retinal[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13374&oldid=39639"