Difference between revisions of "PWY-5972"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-167 RXN1F-167] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-167 RXN1F-167] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-33154]
* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
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* common name:
 +
** stearate biosynthesis I (animals and fungi)
 
* Synonym(s):
 
* Synonym(s):
 +
** stearic acid biosynthesis
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''4''' reactions found over '''6''' reactions in the full pathway
** 1 [[CPD-695]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-10332]][c]
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* [[RXN-9543]]
* With common name(s):
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** 1 associated gene(s):
** 1 gibberellin A53[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 gibberellin44 (open lactone form)[c]
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*** [[Tiso_gene_6671]]
 
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** 1 reconstruction source(s) associated:
== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-9544]]
* Gene: [[Tiso_gene_3330]]
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** 2 associated gene(s):
** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_8022]]
** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_13083]]
== Pathways  ==
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** 2 reconstruction source(s) associated:
* [[PWY-5035]], gibberellin biosynthesis III (early C-13 hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5035 PWY-5035]
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*** [[annotation-in-silico_annotation]]
** '''3''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
== Reconstruction information  ==
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* [[RXN-9623]]
* Category: [[orthology]]
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** 10 associated gene(s):
** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_9394]]
*** Tool: [[pantograph]]
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*** [[Tiso_gene_13394]]
** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_12275]]
*** Tool: [[pantograph]]
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*** [[Tiso_gene_10876]]
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*** [[Tiso_gene_7855]]
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*** [[Tiso_gene_348]]
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*** [[Tiso_gene_136]]
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*** [[Tiso_gene_135]]
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*** [[Tiso_gene_500]]
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*** [[Tiso_gene_4191]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
 +
* [[RXN-9624]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_7477]]
 +
*** [[Tiso_gene_801]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9545 RXN-9545]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9546 RXN-9546]
 
== External links  ==
 
== External links  ==
* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33154}}
** [http://www.genome.jp/dbget-bin/www_bget?R05097 R05097]
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{{#set: taxonomic range=TAX-2}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=stearate biosynthesis I (animals and fungi)}}
{{#set: ec number=EC-1.14.11}}
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{{#set: common name=stearic acid biosynthesis}}
{{#set: gene associated=Tiso_gene_3330}}
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{{#set: reaction found=4}}
{{#set: in pathway=PWY-5035}}
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{{#set: total reaction=6}}
{{#set: reconstruction category=orthology}}
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{{#set: completion rate=67.0}}
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:08, 21 March 2018

Pathway PWY-5972

  • taxonomic range:
  • common name:
    • stearate biosynthesis I (animals and fungi)
  • Synonym(s):
    • stearic acid biosynthesis

Reaction(s) found

4 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links