Difference between revisions of "RXN-1224"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1224 RXN-1224] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1224 RXN-1224] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** 5,6-dimethylbenzimidazole biosynthesis I (aerobic)
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** [http://enzyme.expasy.org/EC/2.4.1.M2 EC-2.4.1.M2]
 
* Synonym(s):
 
* Synonym(s):
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** DMB biosynthesis I
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[RIBOFLAVINKIN-RXN]]
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** 1 [[DIACYLGLYCEROL]][c] '''+''' 1 [[UDP-SULFOQUINOVOSE]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SULFOQUINOVOSYLDIACYLGLYCEROL]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_7479]]
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** 1 a 1,2-diacyl-sn-glycerol[c] '''+''' 1 UDP-α-D-sulfoquinovopyranose[c] '''=>''' 1 UDP[c] '''+''' 1 H+[c] '''+''' 1 an 6-sulfo-α-D-quinovosyl diacylglycerol[c]
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*** [[Tiso_gene_16837]]
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*** [[Tiso_gene_1086]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_7966]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_17894]]
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_12341]]
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* [http://metacyc.org/META/NEW-IMAGE?object=FMNREDUCT-RXN FMNREDUCT-RXN]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8771 RXN-8771]
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* Gene: [[Tiso_gene_11792]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9428]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10734]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_412]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3385]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_19034]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10863]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15050]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWYQT-4427]], sulfoquinovosyl diacylglycerol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4427 PWYQT-4427]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=5,6-dimethylbenzimidazole biosynthesis I (aerobic)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06867 R06867]
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{{#set: common name=DMB biosynthesis I}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=1}}
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{{#set: ec number=EC-2.4.1.M2}}
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{{#set: total reaction=3}}
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{{#set: gene associated=Tiso_gene_7966|Tiso_gene_17894|Tiso_gene_12341|Tiso_gene_11792|Tiso_gene_9428|Tiso_gene_10734|Tiso_gene_412|Tiso_gene_3385|Tiso_gene_19034|Tiso_gene_10863|Tiso_gene_15050}}
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{{#set: completion rate=33.0}}
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{{#set: in pathway=PWYQT-4427}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:10, 21 March 2018

Reaction RXN-1224

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYQT-4427, sulfoquinovosyl diacylglycerol biosynthesis: PWYQT-4427
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1224&oldid=39914"