Difference between revisions of "PWY-7384"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** udp-glucose_4-epim...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-6231 TAX-62...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-6231 TAX-6231]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-6157 TAX-6157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-6340 TAX-6340]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-6447 TAX-6447]
 
* common name:
 
* common name:
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** udp-glucose_4-epimerase_5
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** anaerobic energy metabolism (invertebrates, mitochondrial)
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** udp-glucose_4-epimerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.1.3.2 EC-5.1.3.2]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''12''' reactions in the full pathway
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** 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
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* [[1.1.1.39-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 UDP-&alpha;-D-glucose[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c]
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*** [[Tiso_gene_12896]]
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*** [[Tiso_gene_6675]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_12200]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_9823]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* [[FUMHYDR-RXN]]
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*** Assignment: EC-NUMBER
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** 2 associated gene(s):
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_3691]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_6720]]
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** Source: [[orthology-esiliculosus]]
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** 6 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_15395]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3236]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[manual-primary_network]]
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** Source: [[orthology-synechocystis]]
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* [[METHYLMALONYL-COA-MUT-RXN]]
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* Gene: [[Tiso_gene_10797]]
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** 1 associated gene(s):
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_9771]]
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
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*** [[annotation-in-silico_annotation]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PROPIONYL-COA-CARBOXY-RXN]]
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* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
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** 1 associated gene(s):
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** '''2''' reactions found over '''17''' reactions in the full pathway
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*** [[Tiso_gene_5029]]
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* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
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** 1 reconstruction source(s) associated:
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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* [[PWY-5537]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** 0 associated gene:
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* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
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* [[PYRUVDEH-RXN]]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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** 7 associated gene(s):
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* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
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*** [[Tiso_gene_2515]]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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*** [[Tiso_gene_6983]]
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* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
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*** [[Tiso_gene_17539]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_2693]]
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* [[PWY-7344]], UDP-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
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*** [[Tiso_gene_9330]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[Tiso_gene_7519]]
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== Reconstruction information  ==
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*** [[Tiso_gene_19780]]
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* Category: [[orthology]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* [[SUCCCOASYN-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 2 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_15846]]
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* Category: [[annotation]]
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*** [[Tiso_gene_11866]]
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** Source: [[annotation-experimental_annotation]]
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** 7 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14963 RXN-14963]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8807 RXN-8807]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-268 RXN0-268]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-6231}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22168 22168]
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{{#set: taxonomic range=TAX-6157}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-6340}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
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{{#set: taxonomic range=TAX-6447}}
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* UNIPROT:
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{{#set: common name=anaerobic energy metabolism (invertebrates, mitochondrial)}}
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** [http://www.uniprot.org/uniprot/P35673 P35673]
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{{#set: reaction found=7}}
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** [http://www.uniprot.org/uniprot/P22715 P22715]
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{{#set: total reaction=12}}
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** [http://www.uniprot.org/uniprot/P21977 P21977]
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{{#set: completion rate=58.0}}
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** [http://www.uniprot.org/uniprot/P24325 P24325]
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** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
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** [http://www.uniprot.org/uniprot/Q57664 Q57664]
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** [http://www.uniprot.org/uniprot/P55180 P55180]
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** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
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** [http://www.uniprot.org/uniprot/P56997 P56997]
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** [http://www.uniprot.org/uniprot/Q59083 Q59083]
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** [http://www.uniprot.org/uniprot/Q44016 Q44016]
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** [http://www.uniprot.org/uniprot/Q45291 Q45291]
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** [http://www.uniprot.org/uniprot/P96995 P96995]
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** [http://www.uniprot.org/uniprot/P45602 P45602]
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** [http://www.uniprot.org/uniprot/P18645 P18645]
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** [http://www.uniprot.org/uniprot/P26503 P26503]
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** [http://www.uniprot.org/uniprot/P40801 P40801]
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** [http://www.uniprot.org/uniprot/Q05026 Q05026]
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** [http://www.uniprot.org/uniprot/P56985 P56985]
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** [http://www.uniprot.org/uniprot/Q51148 Q51148]
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** [http://www.uniprot.org/uniprot/Q56093 Q56093]
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** [http://www.uniprot.org/uniprot/Q42605 Q42605]
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** [http://www.uniprot.org/uniprot/Q60109 Q60109]
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** [http://www.uniprot.org/uniprot/P72903 P72903]
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** [http://www.uniprot.org/uniprot/P72915 P72915]
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** [http://www.uniprot.org/uniprot/O66256 O66256]
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** [http://www.uniprot.org/uniprot/O64749 O64749]
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** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
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** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
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** [http://www.uniprot.org/uniprot/Q43070 Q43070]
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** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
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** [http://www.uniprot.org/uniprot/O65780 O65780]
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** [http://www.uniprot.org/uniprot/O65781 O65781]
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** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
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** [http://www.uniprot.org/uniprot/P04397 P04397]
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** [http://www.uniprot.org/uniprot/P09147 P09147]
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** [http://www.uniprot.org/uniprot/P13226 P13226]
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** [http://www.uniprot.org/uniprot/P09609 P09609]
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−
{{#set: direction=REVERSIBLE}}
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{{#set: common name=udp-glucose_4-epimerase_5}}
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{{#set: common name=udp-glucose_4-epimerase}}
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{{#set: ec number=EC-5.1.3.2}}
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{{#set: gene associated=Tiso_gene_9823|Tiso_gene_15395|Tiso_gene_3236|Tiso_gene_10797}}
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{{#set: in pathway=PWY-3821|PWY-6397|PWY-6317|PWY-6527|PWY-7328|COLANSYN-PWY|PWY66-422|PWY-7344}}
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−
{{#set: reconstruction category=orthology|annotation}}
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−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:10, 21 March 2018

Pathway PWY-7384

Reaction(s) found

7 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7384&oldid=39941"