Difference between revisions of "RXN-16625"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.31-RXN 1.2.1.31-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16625 RXN-16625] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase * ec num...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.31-RXN 1.2.1.31-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16625 RXN-16625] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** 3-oxoacyl-synthase
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.31 EC-1.2.1.31]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[ALLYSINE]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CPD-468]][c] '''+''' 1 [[NADH-P-OR-NOP]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[7Z-hexadec-7-enoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''=>''' 1 [[9Z-3-oxo-octadec-9-enoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 NAD(P)+[c] '''+''' 1 (S)-2-amino-6-oxohexanoate[c] '''=>''' 2 H+[c] '''+''' 1 L-2-aminoadipate[c] '''+''' 1 NAD(P)H[c]
+
** 1 H+[c] '''+''' 1 a (7Z)-hexadec-7-enoyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''=>''' 1 a (9Z)-3-oxo-octadec-9-enoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_6563]]
+
* Gene: [[Tiso_gene_5939]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[Tiso_gene_5424]]
+
** Source: [[annotation-experimental_annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_16719]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_5425]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6562]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
+
* [[PWY-7664]], oleate biosynthesis IV (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12306 12306]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03103 R03103]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P50113 P50113]
 
−
** [http://www.uniprot.org/uniprot/P07702 P07702]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=3-oxoacyl-synthase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.3.1.41}}
−
{{#set: ec number=EC-1.2.1.31}}
+
{{#set: gene associated=Tiso_gene_5939}}
−
{{#set: gene associated=Tiso_gene_6563|Tiso_gene_5424|Tiso_gene_16719|Tiso_gene_5425|Tiso_gene_6562}}
+
{{#set: in pathway=PWY-7664}}
−
{{#set: in pathway=LYSINE-DEG1-PWY}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:11, 21 March 2018

Reaction RXN-16625

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7664, oleate biosynthesis IV (anaerobic): PWY-7664
    • 10 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16625&oldid=40027"